Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01716 ATGGACGCGTCGGAGTACCTCAAACCTTCCGTCCGAACTTCGAAGAAGCGCGACTTAGAGGATCAATCTCTGCAACTGGCCTCCGCCAACAAGAGAGTGGCGCTTGGCGAGATCACCAACTCGTTGATCTTCAATACCAGCCAGTGCTCGCTTTCTGATCAGGAGATGACGGATAAGGATATGGACGAGGAGGAACGTCCCGATGGAACCTCTGTTGATTGTTCGAAGAAGTGTCGTTCTGCATCTAGCATCTATAACCACCTTCGATCTCTGGAGATGGAACTGCACATGAAGGTACTGCCCAATAACATCGAAAAGGCTCAAAATGGTGATTCCATTTTAAGTTTCACTTATATGCGAGAAATTCTTGTGGATTGGTTAGTAGAGGTTGCTGAAGAATACAAGCTTGTATCGGACACCCTATATCTCACCATATCACATATGGACATATACTTATCCTCGCAAGCTGTTGACAAAAGCAAGCTGCAGCTTCTTGGTGTTTGTTGCATGCTTCTTGCATCAAAGTATGAAGAGATCAATCCTCCAAATGTTGAAGACTTCTGCTATATAACAGACAATACATATACCAAAGAACAGGTATTGAGTATGGAGAGAGAAGTACGCAAATTCTTGAGCTGTGAAGGTGCCCCCACCATAAAAAATTTTCTCAGGCAAGAATGCTCTTCAACTATCTTATATTTAGTACCTAAAAACATATATTTCTTCTTTTCTCTATATGCGGTTAACTCATTGTTGCCTTCCTACAGAATATTCACACAAGTTTCTTTGGAAAATTGGAAGGCTCCAGACTTGCAATTCGAATTTTTGAGTTGTTACCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGTACAGTTCTTACCATCAATGGTCGCTGCATCAGCTATTTTTCTTTCTAGATTCACAATTCAACCAGATAAACATCCTTGGTGTTTAGCGCTGCAACATTACTCCGGTTACAGACCATCTGAACTGAAGGAATGCATTCTTGCCATTCATCGCTTGCAATTAAATAGAAAAGGAAGCTCTTTACAAGCAATAAGAACCAAGTATAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCTCCCTCAGAAATTCCTGCATATTACTTTGAGGACATTGACAAGCAATCATTCAACAGGTTCTTGAGAACTTAA 1185 41.27 MDASEYLKPSVRTSKKRDLEDQSLQLASANKRVALGEITNSLIFNTSQCSLSDQEMTDKDMDEEERPDGTSVDCSKKCRSASSIYNHLRSLEMELHMKVLPNNIEKAQNGDSILSFTYMREILVDWLVEVAEEYKLVSDTLYLTISHMDIYLSSQAVDKSKLQLLGVCCMLLASKYEEINPPNVEDFCYITDNTYTKEQVLSMEREVRKFLSCEGAPTIKNFLRQECSSTILYLVPKNIYFFFSLYAVNSLLPSYRIFTQVSLENWKAPDLQFEFLSCYLAELSLLDHRFVQFLPSMVAASAIFLSRFTIQPDKHPWCLALQHYSGYRPSELKECILAIHRLQLNRKGSSLQAIRTKYKQHKFKCVAELSSPSEIPAYYFEDIDKQSFNRFLRT 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11366810 11370193 + CmaCh11G017160.1 Cma11g01716 304225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01716 394 SMART cyclin_7 255 341 IPR013763 -
Cma11g01716 394 SMART cyclin_7 125 209 IPR013763 -
Cma11g01716 394 Pfam Cyclin, C-terminal domain 268 371 IPR004367 -
Cma11g01716 394 SUPERFAMILY Cyclin-like 83 213 IPR036915 -
Cma11g01716 394 Gene3D - 84 368 - -
Cma11g01716 394 Pfam Cyclin, N-terminal domain 84 211 IPR006671 -
Cma11g01716 394 Gene3D - 99 215 - -
Cma11g01716 394 SMART Cyclin_C_2 217 372 IPR004367 -
Cma11g01716 394 CDD CYCLIN 119 207 IPR013763 -
Cma11g01716 394 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 327 394 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma11g01716 394 MobiDBLite consensus disorder prediction 53 73 - -
Cma11g01716 394 PIRSF Cyclin_A_B_D_E 253 379 IPR039361 -
Cma11g01716 394 PIRSF Cyclin_A_B_D_E 2 242 IPR039361 -
Cma11g01716 394 CDD CYCLIN 270 340 IPR013763 -
Cma11g01716 394 PANTHER CYCLIN-A3-1-LIKE 256 382 - -
Cma11g01716 394 PANTHER CYCLIN-A3-1-LIKE 26 226 - -
Cma11g01716 394 PANTHER CYCLINS 256 382 IPR039361 -
Cma11g01716 394 PANTHER CYCLINS 26 226 IPR039361 -
Cma11g01716 394 SUPERFAMILY Cyclin-like 258 373 IPR036915 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01716 Cma19g00567 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01716 Cma-Chr11:11366810 Cma17g00828 Cma-Chr17:6501508 9.57E-80 dispersed
Cma01g01803 Cma-Chr1:12023071 Cma11g01716 Cma-Chr11:11366810 1.60E-107 wgd
Cma11g01716 Cma-Chr11:11366810 Cma12g00577 Cma-Chr12:3019501 5.79E-98 wgd
Cma11g01716 Cma-Chr11:11366810 Cma19g00567 Cma-Chr19:6402662 0 wgd
Cma11g01716 Cma-Chr11:11366810 Cma05g00158 Cma-Chr5:686175 8.58E-101 wgd
Cma11g01716 Cma-Chr11:11366810 Cma09g00270 Cma-Chr9:1114199 9.83E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01716 K06627 - csv:101213896 561.607