Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01717 ATGGAAGTTGAACTGGACGAGAAGGAATTGAAAGCCGCCGGAGCTGAGCTCCTGATCGACGGACGGAGAGGTATCCGTATCCATGGTTGGGAGATCGAGACTCACAATCGCTCCATTCTTACCTCCTCCAATTTTGAGCTATGGGAGCAGAAACTTCAGACATCTCACTTGCCAGAGATGGTGTTTGGTGACAGTTCGTTAGTTCTCAAGCATATGGAAACTGGAATTAAAATTTATTTCAATGCCTTTGATGCTCTAGCTGGGTGGAAAAAGGAAGCTCTGCCTCCTGTTGAAGTTCCTGCAGCTGCACAATGGAAATTCAGAAGCAAACCTTTCCAACAGGTGATATTGGATTATGATTATACATTTACAACGCCATATTCTGGGAGTGAAACAATTGAAATAAATGCAGAGAAGCATGGAGGAGAAGAGAAAACATCTGCAGAGAATAATGGTCTCTGTTGGGAGGACAGCCATGAGAAAATTGATTTAGTCTCACTCTCACTGAAGGAGCCTATTCTCTTTTATGATGAGGTAATCTTATATGAGGATGAGTTGGCTGACAATGGTATATCACTTTTAACAGTTAAAGTGAGTCATGCCAAGTTGCTGGTTTCTTCTTCTACGTTTCTGGAGAACATTACGACAATAACAATTTTAGTTCTTTTGCTTACTTCCCCTCTACCTCTGTATGTTCAGCTTAGAGTTGATGGAGTGCTTATGAGACTTAGGGACACTCGTCTGCATTGCGTATTTAGCAACAGTGAAAATCCGATAATTCTTCGAGAAAGTTGCTGGAGAGAGGCTAAGTTTCAAGCTCTAGCTGAAAAAGGATACCCGACTGATTCTGCTGCCTACAACGATCCGAGCATCATCTGCGACAGACTCCCGATCATTATGCAGAAGACCCAAAAGCTTAGAGTTTCTGGGCTCATGTCCGATGATGAGGTCACCATGAAGAACAAAACCATGTCTCGTCTTTAA 984 42.78 MEVELDEKELKAAGAELLIDGRRGIRIHGWEIETHNRSILTSSNFELWEQKLQTSHLPEMVFGDSSLVLKHMETGIKIYFNAFDALAGWKKEALPPVEVPAAAQWKFRSKPFQQVILDYDYTFTTPYSGSETIEINAEKHGGEEKTSAENNGLCWEDSHEKIDLVSLSLKEPILFYDEVILYEDELADNGISLLTVKVSHAKLLVSSSTFLENITTITILVLLLTSPLPLYVQLRVDGVLMRLRDTRLHCVFSNSENPIILRESCWREAKFQALAEKGYPTDSAAYNDPSIICDRLPIIMQKTQKLRVSGLMSDDEVTMKNKTMSRL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11372001 11376626 + CmaCh11G017170.1 Cma11g01717 304226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01717 327 Pfam TIP41-like family 60 199 IPR007303 GO:0043666
Cma11g01717 327 Pfam TIP41-like family 233 274 IPR007303 GO:0043666
Cma11g01717 327 PANTHER TIP41-LIKE PROTEIN ISOFORM X1 1 307 - -
Cma11g01717 327 PANTHER GAF/PUTATIVE CYTOSKELETAL PROTEIN 1 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01717 K17607 TIPRL, TIP41; type 2A phosphatase activator TIP41 - csv:101218043 461.455
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g654 . . . . . . . . . Cmo11g01398 . . . . Sed05g2617 Cpe04g00308 . Bhi05g01058 Tan02g0993 Cmetu01g1914 Lac12g0196 Hepe02g0629 . . Cla02g00658 Cam02g0693 Cec02g0705 Cco02g0725 Clacu02g0699 Cmu02g0697 Cre02g1012 Cone12ag1062 Cone8ag1095 . . Lsi03g00553 Csa07g00706 . Cme01g00100 . . . Bda14g01466 . . Bma03g01376 . . . . Cma11g01717 . Car11g01124 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007560 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01717 Cma_Chr11 FPKM 50.65815 53.403706 43.705143 41.72266 33.873596 30.260075 37.167034 45.719254 45.2477 49.396111