Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01720 ATGACTAATTCTCAAGAAGCTCCTTGCCATGTCTTCCTTGTATGCTATCCCGGCCAAGGACACATCAACCCCACTCTCAGACTTGCCAAGAAACTCGCCGCCGAGGGCCTTCTCGTCACCATTTCCACGGCAGTGCATTTCGGCAAAACACTCCAGAAAGCTGGAAGTATCGGCGCCGGCGACTGTCCCACTCCGGTCGGCAATGGGTTCATCAGATTTGAATTCTTCGAAGATGGCCTCCAAGAGCTCAATCCTAAGGATGTAAACTTGGAACGCGTCGTCAACCAGATCGAGCTTTTCGGCCGGCCGTCGCTCGCCGGCCTGATCAAGAACCAAACAGCCGAAAACCGCTCTGTTTCTTGCCTGATTGTGAACCCCTTTTTGCCATGGACTTGTGAAGTTGCAAAGGAGCTCGAAATCCCCTGTGCCATTCTTTGGGTTCAATCATGCGCTGTGTTCTCAATTTACTATCACTGTTTCCACAAATCCGTCCCGTTCCCTTCTGAATTGGAACCCAAAATCGACGTTCATCTCCCAATTTTGCCACTTTTGAAGAACGACGAAATCCCAAGCTTCTTGCATCCAAATAACATTTATGGTGTTTTGGGGAATGTTCTGTTATCCCAATTCAGTAAATTATCGACACCCTTTTGTATTTTGATGGATACTTTTGGTGAACTCGAGAAAGACATCATCAATTACATGTCTAACATCACTCCTTTGAAACCCATCGGCCCATTGTTCATAAACCCTCAAAATTTAGAAACAGAGGTCTCCGGCCACTGCTTAAAAGCAGAGGATTGTGTGGAATGGCTGAACTCAAAGCCCCCACAATCCGTTGTGTACGTTTCATTTGGAAGCATCGTTCACTTGAAACAAGAGCAAATAGACGAGCTCGCTTACGGGCTGTGCAATTCAGGGTTCTCATTCTTATGGGTTATGAAACCGCCCGATGATGTTTACGGGTTAAAGGGCCATGTTTTGCCAGAAGAGGTGATGGAGAAAGCAGGGGAGAGGGGAAAAGTGGTGCAATGGAGTTCCCAAGAGAGGGTTTTGTCGCATGAATCTGTTGGGTGCTTTATCACGCATTGTGGGTGGAATTCGTCGGTGGAAGCCATCGGCAACGGCGTGCCGGTGGTGGCGTTTCCGCAGTGGGGGGATCAGGTGACCAATGCTAAGTTTTTGGTGGAGGATTATGGAGTTGGGGTGAGGCTGTCGCGTGGTGCAGAGGCAAATGAGTTGATTTCAAGGGATGAGATTGTGAGATGCATATCGGAGGTGATGATCCGCGAGAGCAGCGGAGGAGAATTCAGGCGGAATGCTTTGAAATTGAAGCAGGCAGCGGCGGCGGCCGTGGTGGACGGCGGATCCTCCCACAAGAACATCCAAGAGTTTGTTGATGAGATTAAGAAGAGATGCGTGAGAGGCAACTTTGAGTAA 1440 48.96 MTNSQEAPCHVFLVCYPGQGHINPTLRLAKKLAAEGLLVTISTAVHFGKTLQKAGSIGAGDCPTPVGNGFIRFEFFEDGLQELNPKDVNLERVVNQIELFGRPSLAGLIKNQTAENRSVSCLIVNPFLPWTCEVAKELEIPCAILWVQSCAVFSIYYHCFHKSVPFPSELEPKIDVHLPILPLLKNDEIPSFLHPNNIYGVLGNVLLSQFSKLSTPFCILMDTFGELEKDIINYMSNITPLKPIGPLFINPQNLETEVSGHCLKAEDCVEWLNSKPPQSVVYVSFGSIVHLKQEQIDELAYGLCNSGFSFLWVMKPPDDVYGLKGHVLPEEVMEKAGERGKVVQWSSQERVLSHESVGCFITHCGWNSSVEAIGNGVPVVAFPQWGDQVTNAKFLVEDYGVGVRLSRGAEANELISRDEIVRCISEVMIRESSGGEFRRNALKLKQAAAAAVVDGGSSHKNIQEFVDEIKKRCVRGNFE 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11395794 11397233 - CmaCh11G017200.1 Cma11g01720 304229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01720 479 CDD GT1_Gtf-like 10 440 IPR002213 GO:0008194
Cma11g01720 479 Gene3D Glycogen Phosphorylase B; 257 450 - -
Cma11g01720 479 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 7 473 - -
Cma11g01720 479 ProSitePatterns UDP-glycosyltransferases signature. 345 388 IPR035595 -
Cma11g01720 479 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 7 473 - -
Cma11g01720 479 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 267 407 IPR002213 GO:0008194
Cma11g01720 479 Gene3D Glycogen Phosphorylase B; 14 462 - -
Cma11g01720 479 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01720 - - K23279 csv:101215819 721.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01720 Cma-Chr11:11395794 Cma11g01722 Cma-Chr11:11415101 0 dispersed
Cma11g01720 Cma-Chr11:11395794 Cma11g01721 Cma-Chr11:11401288 0 tandem
Cma11g01720 Cma-Chr11:11395794 Cma19g00578 Cma-Chr19:6455405 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g636 . . . . . . . . Cmo19g00592 Cmo11g01395 . . . . . . Cpe15g00464 Bhi05g01104 . . . . . . Cla02g00642 . . . . . . . . . . Lsi03g00537 Csa07g00717 . Cme01g00090 . . . . . . . . . . . Cma11g01720 . Car11g01121 . . . . . . . . . . . . . . . . . . . Chy01g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01720 Cma_Chr11 FPKM 70.256592 74.622543 0.032013 0.030292 0.0 0.0 0.147966 0.024794 0.042025 0.022138