Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01724 ATGCAGTCGCTGCTCTCGCCGGTGCCTCGCACTGGAGCCTTCCCGGCCGCCGCAGTCTATTCATCGGATTTTCACCTCAGCCACTTCCATTGCCGGCCTTTCTCTGTACGAGGCCGTCAAGCGTCCGATCTCAATTCTCCTCCCAATTCACTTCCTTCGTTTAGCGCCATTCGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTTGTTGCTTTCAAAGACTTTTGGTACTCTGGAGCATAGGAGAGGACAATTTTGTTTGGAAACACGCGCTTCTTCTAGTTCCATTTCGCCGACGGTTCCCCCAATTGATGAGGCTGAAAAGTTGAAACTGGCTCAGGTGGCAAAGAGATTAGAGAAGACATCGAGGTACTTCAAGAGGTTGGGTAATCTTGGATTTTGGGGACAGTTGGTGCTCACTGTTGTGGCTGCCGTTATTCTTTCATTTTCTGTTGTCATCACCGGGAAAATTATATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTTGGTTACATTCGGCTTTCTGATAAACTTCGACGGACTGCAAACCAGCCCTCCAAGGCTCCTCCTCGGGCCGATGTCGTGAATAGTCTAAAAAATGGAATTGTGATGAACCTTCTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGACGGTAGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCTGCAACTCCATATTTCCAGGCAGCCTCGCCTGGGAATAGCCCTGTTCTTGCTTTGGATGTATTCTTGGTACAGGCTTCTGCAAACACTATCCTCTCCCATTTCCTCGGGCTCGTTTTCTCGTTGGAGCTACTGCGATCTCCGAGTCACCAGAAGAATTCAAGCTGTCACTGGACGAAGAAGGCGACGCGATTTGAAGTACACACAGAGATGTTGCCTACAGCTTCCAGAGGGCGCTCCTCGTCCTCTACATCTCGAGCTAATCCCATGTATCTACAGTACCTTCGTCGAATTGTCAAGTGGCAACAAATGGACATCGAATATACATTCTGGCAAATGCTTCAACTATGCACTTCACCGAAAGTTGTTCTTCTTTTGGCAGTTGCAACTTTGGCTTACTGTGCTGCATATGATCATAGTGCATCACATGCCACCTTTGTTGTTATTTCAGTACTGCTCTCTCATTTGCTAATAACTGGGGCGATTTTGGCTACTTGTTGTTGCATCTATGATACCACTCTGAAATATTGGTTTCCTTGCAGTGATCCATTATTTCATATCACCGCTTCTGGTGGCGCATGGCTTCATTCCGTTATTGCTATCAAATTTACTTTTCATGATTGGGGCTTCGTATTACCATTACGTCAACTTTTTAGTACTGCCATTTTTGGAGAAAACTACGTTCTTCCTCTATCCAATTGGTGTGGTCTTTGTTCTTACTCCAATCTTTATCTTGATTGGCTTCAACCCATCAAGATATTTCATGAATATGTACTTCAGTCGGAACCTATAATCTCGAGTTACGGATTCGGCTACACATACCTTGAGGAGGCGCAGGATTGA 1572 45.87 MQSLLSPVPRTGAFPAAAVYSSDFHLSHFHCRPFSVRGRQASDLNSPPNSLPSFSAIRSSSSSSSSSSSLLLSKTFGTLEHRRGQFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTSRYFKRLGNLGFWGQLVLTVVAAVILSFSVVITGKIISPATFYATAGGIVAAFISVFWSFGYIRLSDKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQATVGLLVAKALTSSATPYFQAASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSPSHQKNSSCHWTKKATRFEVHTEMLPTASRGRSSSSTSRANPMYLQYLRRIVKWQQMDIEYTFWQMLQLCTSPKVVLLLAVATLAYCAAYDHSASHATFVVISVLLSHLLITGAILATCCCIYDTTLKYWFPCSDPLFHITASGGAWLHSVIAIKFTFHDWGFVLPLRQLFSTAIFGENYVLPLSNWCGLCSYSNLYLDWLQPIKIFHEYVLQSEPIISSYGFGYTYLEEAQD 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11433737 11446037 - CmaCh11G017240.1 Cma11g01724 304233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01724 523 PANTHER PROTEIN TIC 21, CHLOROPLASTIC 1 299 IPR022051 -
Cma11g01724 523 Pfam UNC-50 family 337 366 IPR007881 -
Cma11g01724 523 Pfam Protein of unknown function (DUF3611) 117 289 IPR022051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01724 - - - cmax:111486084 528.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01724 Cma-Chr11:11433737 Cma19g00580 Cma-Chr19:6473219 7.77E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g621 . . . . . Bpe12g00299 . . Cmo19g00596 Cmo11g01391 . . . . . Cpe04g00303 Cpe15g00468 . . . . . . . Cla02g00634 Cam02g0667 Cec02g0673 Cco02g0697 Clacu02g0675 Cmu02g0669 Cre02g0990 Cone12ag1072 Cone8ag1107 . . Lsi03g00530 . . . . . Bda15g00843 . . . Bma03g01367 Bma08g00497 . . . Cma11g01724 . Car11g01117 Car19g00442 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006867 1 1 0 2 2 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01724 Cma_Chr11 FPKM 9.404939 11.897146 11.528494 12.140745 14.506293 14.179346 15.585151 15.754912 14.667469 16.09186