Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01726 ATGAAAATCTTCTCTCTCCTCCTCCTCCTCCTCTCTCTCTCCTCCCTCGCTCATTCTCTCACCTCCCCCTCCGATCTCTCCGCCCTCAAATCCTTCAAATCCGCCATCAAACCCTCTTCCATCCCCCCTTGGTCCTGTCTCGCCTCCTGGAATTTCTCCGTCGATCCCTGCGCCCTCCCCCGCCGCACCTCCTTCTCCTGCGGCCTCCTCTGCAACCCTGCCGCCACTCGCATAACCCAACTCACCCTCGATCCCGCCGGCTATTCCGGCACTCTCTCCCCACTCCTCTCTCGCCTCACTCAATTGACCGTTCTCGACCTCGCCGACAACTCCTTCTCCGGTCTCATCCCCTCTGCCATTTCCTCTCTCTCCAATCTCCAAATCCTCATTCTCCGTTCCAATTCCTTCACCGGAGCGATCCCACCCTCAATTTCCAACCTTAAATCCCTCGAATCCTTGGATCTCTCTCACAATTCCCTCGCCGGAAATCTCCCCAAATCTCTGGTTTTCCTCTCTGCTTTACGACGCCTCGATCTCAGCTTCAATCGACTCACCGGCTCCATTCCAAAACTCCCGCCGAACTTACTCGAACTCGCTTTAAAACGAAATTCCCTTTCTGGGTATTTGGAGAAATCGTCTTTTCTCGAGTCGACTCAGTTGGAGGTCATCGAACTCAGTGAAAACTCGCTCGCTGGAACCTCGCCGGCTTGGTTCTTCCTCCTCCCATCCGTCCAGCAGATTAATTTGGCTAATAACAGCCTGACGCGTGTCGAGATCTCCCCTGCTGCCGCTACGGGCAGTGACCTCGTTGCCGTCGATTTGGGGTTCAATAGAATCGAGGGGAACGTGCCAGTGAATTTCGCGAGCTATCCGGCGCTGTCGGCGCTGTCGCTCCGGTACAATCGGTTACGTGGGACGATCCCATTGGAGTTCAGCCAGATGAAGACGATGAAGAGGTTGTACTTGGATGGGAACTTCCTGACGGGGAAGCCGCCGGCGGAGTTCTTCTTCGGCGGTGATCCGGTCTCCGGTAGCTTGGGGGATAATTGTCTGCAGGGATGTCCACAGTCGTCTCACCTGTGCGCTCCGTCGCAGAAGCCGAACGCTGTTTGCAAGGAAGCGTACGGAAGCGGGAGGGGAAAAGGAAAACCGATGACCTGA 1161 55.9 MKIFSLLLLLLSLSSLAHSLTSPSDLSALKSFKSAIKPSSIPPWSCLASWNFSVDPCALPRRTSFSCGLLCNPAATRITQLTLDPAGYSGTLSPLLSRLTQLTVLDLADNSFSGLIPSAISSLSNLQILILRSNSFTGAIPPSISNLKSLESLDLSHNSLAGNLPKSLVFLSALRRLDLSFNRLTGSIPKLPPNLLELALKRNSLSGYLEKSSFLESTQLEVIELSENSLAGTSPAWFFLLPSVQQINLANNSLTRVEISPAAATGSDLVAVDLGFNRIEGNVPVNFASYPALSALSLRYNRLRGTIPLEFSQMKTMKRLYLDGNFLTGKPPAEFFFGGDPVSGSLGDNCLQGCPQSSHLCAPSQKPNAVCKEAYGSGRGKGKPMT 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11457715 11458875 - CmaCh11G017260.1 Cma11g01726 304235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01726 386 Gene3D Ribonuclease Inhibitor 22 191 IPR032675 -
Cma11g01726 386 Pfam Leucine Rich Repeat 318 335 IPR001611 GO:0005515
Cma11g01726 386 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515
Cma11g01726 386 SMART LRR_typ_2 123 146 IPR003591 -
Cma11g01726 386 SMART LRR_typ_2 171 198 IPR003591 -
Cma11g01726 386 SMART LRR_typ_2 99 122 IPR003591 -
Cma11g01726 386 SMART LRR_typ_2 241 266 IPR003591 -
Cma11g01726 386 SMART LRR_typ_2 147 170 IPR003591 -
Cma11g01726 386 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 4 380 - -
Cma11g01726 386 Gene3D Ribonuclease Inhibitor 192 361 IPR032675 -
Cma11g01726 386 Pfam Leucine rich repeat 193 254 IPR001611 GO:0005515
Cma11g01726 386 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Cma11g01726 386 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 380 - -
Cma11g01726 386 SUPERFAMILY L domain-like 66 339 - -
Cma11g01726 386 ProSiteProfiles Leucine-rich repeat profile. 173 195 IPR001611 GO:0005515
Cma11g01726 386 PRINTS Leucine-rich repeat signature 102 115 - -
Cma11g01726 386 PRINTS Leucine-rich repeat signature 147 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01726 - - - csv:101221363 634.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01726 Cma-Chr11:11457715 Cma14g01047 Cma-Chr14:5508654 1.43E-08 dispersed
Cma11g01726 Cma-Chr11:11457715 Cma16g00645 Cma-Chr16:3354250 4.47E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01726 Cma_Chr11 FPKM 27.540913 31.608727 20.280514 22.347851 26.588524 19.108271 23.816172 10.957328 9.941828 8.473226