Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01727 ATGGATCTCCGATTTTCTTTTCTCCTCTTCCTTTTCTTGCAGGCTGTTTCCGGCCTCCTCCTCGCCGCTGCGTCCAACGTTGCCTACCCCTCCGTCGTCGATACTGGAGCCGGTGATTGCTCAGTTTCCGACGGCGGCGATGGCAGCCTCACTCCTATCCGTCGAGAAGTTTACGATAATGGACGAATCATCGACATCAGTCATCGGTTTACTGTAGATATGCCGTCTTGGGAATCTGACGAAGGGCTTGGCCAGTTTCTGTGGCTTCCGAAGAGCATGAAGAATGGTTCGCTTGCTAATAACTCTGAAATGAAGCTTCCGGCTCACACTGGCACGCACGTCGATGCACCTGGTCATGTTTTTGATCATTACTTTGATGCGGGATTCGATGTTGACACACTCGACTTGGGAGTCCTCAATGGTCCTGGACTGTTGGTTGACGTTCCAAGGGATAAGAACATTACTGCTGAAGTCATGAAGTCTTTGAACATTCCCAAAGGAGTACGCCGTGTACTCTTCAGAACATTAAATACTGACAGAGGTCTCATGTGGAAAAAGGAGTTTGACACGAGCTATGTTGGATTTATGAAGGATGGAGCAAAATGGCTTGTAGACAACACTGATATCAAACTAGTTGGAATTGACTACTTATCAGTTGCTGCCTTTGATGATCTTATTCCATCTCATCTCGAATTTTTAGAAGGCAGGGAAACCATTCTTGTCGAAGGCTTAAAGCTTGATGGCGTCCAGCCGGGATTATATTCGATTCATTGCTTGCCTCTTAGGTTGCTTGGCGCCGAGGGGTCGCCAATCAGATGCATTCTAATCAAGTATCCAAATGAGATTTCAAAAGACCGGACCGGGACCGGGTCGGTCTTTCACCAACAGCCTTTTAGAAGGTCTCCACACTCGGAAACCCTCGGAAGTCGGAAGAGAGAGGCAGAAAGACAGAGAGAGGAGGGAGCCATGGAAGGGGCATCGTACCAGCGCTTTCCGAAGGTCAAGATCCGAGAGCTCAGAGATGACTATGCCAAATTCGAGCTCCACGACACTGATGTTAGCATGGCCAACGCCCTCCGTCGCGTCATGATCGCCGAGGTCCCCACCATCGCCATCGACCTGGTAGAAATTGAAGTGAACTCCTCAGTTCTCAACGATGAGTTCATCGCCCATCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCTATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGTGCCAAGTGCCACTCTGACCAAACCCTAGACGTCTCCAGCAAGGATCTCTATAGTTCCGATCACACTGTTGTCCCTGTTGATTTCTCTGATTCTGCAGCAGCTGCTGGTGAAGCCCTTGATACCAATTGGGTAGACTTTTTCGTGGTCTGTACTTCAAAGTATGCAACGCCATCTGCTATTCGGTTTACAAATGGAGGAGGAATAATCATTGTGAAGCTACGTCGGGGTCAAGAATTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACTGTGACCTTCATGTATGAACCAAGCATTCACATCAATGAAGACCTAATGGAGACATTAACACTAGAGGAAAAGACTTCCTGGGTTGAAAGTAGCCCAACCAAAGTCTTTGAATTGGATCCTGTTACCCACCAGGTTCTGGTGGTTGATCCAGAGGCATACACTTATGATGATGAAGTGATTAAGAAAGCAGAGGCAATGGGTAAAGCTGGACTAGTGGATATCACTGCGAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATAAAAGCTTCCCAGTTGATACTCAATGCCATAGATATTCTGAAACAGAAACTGGATGCAGTCCGCCTTTCAGACGATACTGTAGAAGCAGATGATCAGTTTGATATGCTTTCTGGAATGGCATTCTCATTTGAAATATGCGAGGATTATTTGTTGGTTGGTGGAAGCTCTTACAGGTTGGAGCTTTAG 2055 47.69 MDLRFSFLLFLFLQAVSGLLLAAASNVAYPSVVDTGAGDCSVSDGGDGSLTPIRREVYDNGRIIDISHRFTVDMPSWESDEGLGQFLWLPKSMKNGSLANNSEMKLPAHTGTHVDAPGHVFDHYFDAGFDVDTLDLGVLNGPGLLVDVPRDKNITAEVMKSLNIPKGVRRVLFRTLNTDRGLMWKKEFDTSYVGFMKDGAKWLVDNTDIKLVGIDYLSVAAFDDLIPSHLEFLEGRETILVEGLKLDGVQPGLYSIHCLPLRLLGAEGSPIRCILIKYPNEISKDRTGTGSVFHQQPFRRSPHSETLGSRKREAERQREEGAMEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVSSKDLYSSDHTVVPVDFSDSAAAAGEALDTNWVDFFVVCTSKYATPSAIRFTNGGGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFDMLSGMAFSFEICEDYLLVGGSSYRLEL 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11461640 11473920 + CmaCh11G017270.1 Cma11g01727 304236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01727 684 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 333 647 IPR022842 GO:0003899|GO:0006351
Cma11g01727 684 Gene3D - 369 525 IPR036643 -
Cma11g01727 684 SUPERFAMILY Putative cyclase 61 276 IPR037175 GO:0004061|GO:0019441
Cma11g01727 684 MobiDBLite consensus disorder prediction 287 324 - -
Cma11g01727 684 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 368 529 IPR036643 -
Cma11g01727 684 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 345 640 IPR011263 GO:0003899|GO:0006351
Cma11g01727 684 SMART rpoldneu2 343 646 IPR011263 GO:0003899|GO:0006351
Cma11g01727 684 Pfam Putative cyclase 64 219 IPR007325 GO:0004061|GO:0019441
Cma11g01727 684 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 357 397 IPR001514 GO:0003677|GO:0003899|GO:0006351
Cma11g01727 684 SUPERFAMILY RBP11-like subunits of RNA polymerase 332 648 IPR036603 GO:0006351|GO:0046983
Cma11g01727 684 MobiDBLite consensus disorder prediction 304 323 - -
Cma11g01727 684 PANTHER DNA-DIRECTED RNA POLYMERASE 325 466 - -
Cma11g01727 684 MobiDBLite consensus disorder prediction 287 303 - -
Cma11g01727 684 PANTHER BNAA09G08480D PROTEIN 325 466 - -
Cma11g01727 684 Pfam RNA polymerase Rpb3/RpoA insert domain 375 528 IPR011262 GO:0003899|GO:0006351|GO:0046983
Cma11g01727 684 Gene3D - 334 639 IPR036603 GO:0006351|GO:0046983
Cma11g01727 684 CDD RNAP_II_RPB3 332 649 - -
Cma11g01727 684 PANTHER BNAA09G08480D PROTEIN 492 660 - -
Cma11g01727 684 Gene3D Putative cyclase 57 276 IPR037175 GO:0004061|GO:0019441
Cma11g01727 684 PANTHER DNA-DIRECTED RNA POLYMERASE 492 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01727 K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3 - csv:101218763 574.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00667 Cma-Chr6:3307776 Cma11g01727 Cma-Chr11:11461640 5.82E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1112 . . . Csa07g00730 . Cme01g00078 . . . Bda14g01455 . . Bma03g01368 . . . . Cma11g01727 . . . . . . . . . . . . . . . . . . . . . Chy01g00084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009530 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01727 Cma_Chr11 FPKM 38.475983 38.924438 47.906563 47.697758 34.422516 38.557823 33.882278 78.153778 75.340904 76.074188