Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01728 ATGGCTCTACACCCACATGAACACACGACCCAGCGCCACCACAACACTCTCTTCTTCCTCCACTGCACACACCGACAGCACCAACAACAACAACAACAACACCTGCAAACAGAGGACCCCATTTTCCGCGACAATGGCGGCACCCACTATCTGGAACAGACGACCCATTTCGTTACTTTCGAAGATGAAGAGCTTGGTTCTTTGTTAGCCAAAGAACGAGATCAGAATCTCCAAAACGGCGACGTTTTGGAGCGCTTAATTGAAAGAGACGCCGCTCTGTCTCTGGCTAGAACAGAGGCCGTCGAGTGGTTGCTTAAAGTTAATACCTTTTATGGCTTCTCCTCTGTCACCGCTCTCTTAGCCATTAATTACCTCGATCGAATCCTCTCTGGTCCTCATTTTCAAAGAAACAAGCCATGGATGCTTCAACTTCTTGCAGTAACTTGTATCTCTTTAGCAGCTAAAGTCGAAGAAATTCGTGTTCCTCTTCTTCTTGATCTCCAGGTGGAAGATTCAAAGTTCATATTTGAGCCAAAAACGATACAAAGAATGGAGCTTTTGGTGCTGAGTGGTCTGAAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTCTTGGCATTGTAACGAAGCGGCTTGGGTTGAAGAATCAGTGCATTGAGAGGGAGCTTTTCCGGCGCTGTGAGCGTATTCTTCTCTCTCTCGTGTCTGATTCGAGATCAGTGGGGTTTCTTCCCTCTGTGATGGCTGTATCGGCAATGGTGAGCGTTGTTGAAGAGATGGGTGACTGTAACTGTTACTGTAACCCATTGGACTTTCAGGATCGCCTTCTTAATGCCCTCAAAATAACCAAGGAAAGATCGAAGAAATGCTGCAACGTGATAAGGGAGGTAACGAAACGGGAAACGAAAGCGAACCGATCGGGAAAGAAGAGGAAGCAGAATGAGGAGGACGAGGCGGAGGAGGAAGAAGACGACGACGACGAAGAGAGATCAAGAACATCATTAGAAACAGAAACAGGATCAGAATCAGAAGGAGGAAGCCCAAATGGAGTAATGGAAGGCAATTTCAGCTGTGAAAGCTCCAATGATTCGTGGGGCATGGAAGAAGTCACAGGCTGTTGTTGTTCCAAAAGAACCAAAAGCAGTGAAGAATCATGA 1158 46.72 MALHPHEHTTQRHHNTLFFLHCTHRQHQQQQQQHLQTEDPIFRDNGGTHYLEQTTHFVTFEDEELGSLLAKERDQNLQNGDVLERLIERDAALSLARTEAVEWLLKVNTFYGFSSVTALLAINYLDRILSGPHFQRNKPWMLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKFIFEPKTIQRMELLVLSGLKWKMHPVTPVSFLGIVTKRLGLKNQCIERELFRRCERILLSLVSDSRSVGFLPSVMAVSAMVSVVEEMGDCNCYCNPLDFQDRLLNALKITKERSKKCCNVIREVTKRETKANRSGKKRKQNEEDEAEEEEDDDDEERSRTSLETETGSESEGGSPNGVMEGNFSCESSNDSWGMEEVTGCCCSKRTKSSEES 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11487243 11489568 - CmaCh11G017280.1 Cma11g01728 304237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01728 385 MobiDBLite consensus disorder prediction 302 316 - -
Cma11g01728 385 MobiDBLite consensus disorder prediction 302 385 - -
Cma11g01728 385 PANTHER CYCLINS 52 358 IPR039361 -
Cma11g01728 385 MobiDBLite consensus disorder prediction 338 367 - -
Cma11g01728 385 PANTHER CYCLIN-D3-1 52 358 - -
Cma11g01728 385 Coils Coil 305 332 - -
Cma11g01728 385 CDD CYCLIN 97 189 IPR013763 -
Cma11g01728 385 Pfam Cyclin, N-terminal domain 75 196 IPR006671 -
Cma11g01728 385 Gene3D - 76 291 - -
Cma11g01728 385 Gene3D - 79 197 - -
Cma11g01728 385 Pfam Cyclin, C-terminal domain 199 317 IPR004367 -
Cma11g01728 385 ProSitePatterns Cyclins signature. 97 128 IPR006671 -
Cma11g01728 385 SMART cyclin_7 102 190 IPR013763 -
Cma11g01728 385 MobiDBLite consensus disorder prediction 317 331 - -
Cma11g01728 385 SUPERFAMILY Cyclin-like 88 197 IPR036915 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01728 Cma19g00585 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01728 Cma-Chr11:11487243 Cma03g00834 Cma-Chr3:6287640 8.54E-49 dispersed
Cma01g01813 Cma-Chr1:12047797 Cma11g01728 Cma-Chr11:11487243 2.21E-70 wgd
Cma11g01728 Cma-Chr11:11487243 Cma12g00567 Cma-Chr12:2965391 5.02E-67 wgd
Cma11g01728 Cma-Chr11:11487243 Cma16g00347 Cma-Chr16:1632612 9.93E-88 wgd
Cma11g01728 Cma-Chr11:11487243 Cma19g00585 Cma-Chr19:6507822 1.83E-152 wgd
Cma11g01728 Cma-Chr11:11487243 Cma04g00476 Cma-Chr4:2429635 3.16E-81 wgd
Cma11g01728 Cma-Chr11:11487243 Cma05g00163 Cma-Chr5:698112 4.54E-71 wgd
Cma11g01728 Cma-Chr11:11487243 Cma07g00683 Cma-Chr7:3002281 1.07E-72 wgd
Cma11g01728 Cma-Chr11:11487243 Cma09g00261 Cma-Chr9:1092895 6.46E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01728 K14505 - csv:101222066 428.328