Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01730 ATGGATCCAAAATCTACTGATTCCCCACCGTCACCTACTGTTCATTCCTCGGCTACTAAATTTCCAGAAGTACATCCTCAGGCTCCTGCTTCCTCTGGAATGGACAATGTGGCACGTGAGGCACCATCTAAGCTATCTTCTTCTGGCATAACTTCATGGGCTAAGAACTTGAAAATTTCTCAACCACAGTCAGCTTCACCAGATGGCACGACTGAAAATGCTGGGAAGTCAGCGTTTGCTCGTTTTACTAGTGGCTTAGGCTTGAATTTATCTCCAAAATCTGCTGCACCTAATGATTCCCCAGATGCCACTTCTAAACCTGCCCAACCCAGTTTGGTTGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTTCAAGTTAAAGCGCGTCATGTTGTCTCCCAAAACAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGACATGACTTATATTACTGAAAATATCATTGCAATGGGTTTCCCTGCGGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGAAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACACATCACAAGGGAAAATACAAAGTATACAATCTTTGTTCCGAGAGGCTATATGATGCGTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCTGTTCAATTGATAATATCATTTTGCCAAAGTGCGTATTCATGGTTGAAGGATGATATCGAAAATGTTGTGGTTGTGCATTGCAAGGCAGGAATGGCCCGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTCTTTCCAACAGCTGAAGAATCTATTGAATACTACAACCAGAGAAGGTGTTTCGATGGCAAAGGCCTGGTCTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTGTTTTAACCTACTTCAATGGAGAAAATCCTCCTGGCCGCAGTTGTGTACTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACACATCAAAGAACCAAGAATCTGTCGCCAGAAGATTTTTGGTTTACTGCTCCAAAAAAGGGGATAATGGTATTCGCCTTACCCGGGGAGCCTGGTCTAGCTGAGTTGTGCGGGGACTTCAAGGTTCATTTCCATGATCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGAAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATATGTTGCCGAACGTGGACAATACGACCAAGAAATCAGATGAAAGCTCGGGCTCGAAATCTTCTGCAGTTGATGGGAGTGAAGTTTCTGATAACCAAAACAGAAAATCAGTAACTAATGAGAAAGATGATGTATTTTCTGACAGTGAATCAGAAGATGGTTCTGCAAAGAGCAAGGATGGAGCATCAGGTTCAGGGTCTGAAGCATCAGCTGTCAAGACGACATCTAAATCTCAAACGAGTGCGACTTCATCCGACGATGCTGCGAGTTTATCACATGCGACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGGCTGCTCCAGCAGCCAGTGACCGAAAAGGCGATGGAGTCAAAAGATCTGATTCCCTCTCAGAAATTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGGGACGACGAAGACTACGAGAGTGAGTAA 1839 43.5 MDPKSTDSPPSPTVHSSATKFPEVHPQAPASSGMDNVAREAPSKLSSSGITSWAKNLKISQPQSASPDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDATSKPAQPSLVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERVLTYFNGENPPGRSCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKNLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDMLPNVDNTTKKSDESSGSKSSAVDGSEVSDNQNRKSVTNEKDDVFSDSESEDGSAKSKDGASGSGSEASAVKTTSKSQTSATSSDDAASLSHATKQVSLGDGGAKQAAPAASDRKGDGVKRSDSLSEIPNSESEFKAMAADASVFTFGDDEDYESE 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11504002 11508959 - CmaCh11G017300.1 Cma11g01730 304239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01730 612 MobiDBLite consensus disorder prediction 41 75 - -
Cma11g01730 612 MobiDBLite consensus disorder prediction 462 591 - -
Cma11g01730 612 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g01730 612 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Cma11g01730 612 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Cma11g01730 612 MobiDBLite consensus disorder prediction 1 75 - -
Cma11g01730 612 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311|GO:0016791
Cma11g01730 612 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Cma11g01730 612 MobiDBLite consensus disorder prediction 490 512 - -
Cma11g01730 612 MobiDBLite consensus disorder prediction 462 489 - -
Cma11g01730 612 SMART PTEN_C2_2 328 456 IPR014020 -
Cma11g01730 612 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
Cma11g01730 612 MobiDBLite consensus disorder prediction 513 552 - -
Cma11g01730 612 MobiDBLite consensus disorder prediction 90 111 - -
Cma11g01730 612 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 15 612 - -
Cma11g01730 612 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 350 454 IPR035892 -
Cma11g01730 612 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Cma11g01730 612 CDD PTP_PTEN 154 318 IPR045101 GO:0016791
Cma11g01730 612 Gene3D - 337 458 - -
Cma11g01730 612 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 15 612 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01730 Cma19g00587 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01149 Cma-Chr11:6608799 Cma11g01730 Cma-Chr11:11504002 3.36E-47 transposed
Cma14g00570 Cma-Chr14:2850326 Cma11g01730 Cma-Chr11:11504002 4.73E-07 transposed
Cma11g01730 Cma-Chr11:11504002 Cma19g00587 Cma-Chr19:6516097 0 wgd
Cma11g01730 Cma-Chr11:11504002 Cma07g00685 Cma-Chr7:3010426 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01730 K01110 - csv:101222304 1060.06