Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01730 | ATGGATCCAAAATCTACTGATTCCCCACCGTCACCTACTGTTCATTCCTCGGCTACTAAATTTCCAGAAGTACATCCTCAGGCTCCTGCTTCCTCTGGAATGGACAATGTGGCACGTGAGGCACCATCTAAGCTATCTTCTTCTGGCATAACTTCATGGGCTAAGAACTTGAAAATTTCTCAACCACAGTCAGCTTCACCAGATGGCACGACTGAAAATGCTGGGAAGTCAGCGTTTGCTCGTTTTACTAGTGGCTTAGGCTTGAATTTATCTCCAAAATCTGCTGCACCTAATGATTCCCCAGATGCCACTTCTAAACCTGCCCAACCCAGTTTGGTTGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTTCAAGTTAAAGCGCGTCATGTTGTCTCCCAAAACAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGACATGACTTATATTACTGAAAATATCATTGCAATGGGTTTCCCTGCGGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGAAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACACATCACAAGGGAAAATACAAAGTATACAATCTTTGTTCCGAGAGGCTATATGATGCGTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCTGTTCAATTGATAATATCATTTTGCCAAAGTGCGTATTCATGGTTGAAGGATGATATCGAAAATGTTGTGGTTGTGCATTGCAAGGCAGGAATGGCCCGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTCTTTCCAACAGCTGAAGAATCTATTGAATACTACAACCAGAGAAGGTGTTTCGATGGCAAAGGCCTGGTCTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTGTTTTAACCTACTTCAATGGAGAAAATCCTCCTGGCCGCAGTTGTGTACTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACACATCAAAGAACCAAGAATCTGTCGCCAGAAGATTTTTGGTTTACTGCTCCAAAAAAGGGGATAATGGTATTCGCCTTACCCGGGGAGCCTGGTCTAGCTGAGTTGTGCGGGGACTTCAAGGTTCATTTCCATGATCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGAAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATATGTTGCCGAACGTGGACAATACGACCAAGAAATCAGATGAAAGCTCGGGCTCGAAATCTTCTGCAGTTGATGGGAGTGAAGTTTCTGATAACCAAAACAGAAAATCAGTAACTAATGAGAAAGATGATGTATTTTCTGACAGTGAATCAGAAGATGGTTCTGCAAAGAGCAAGGATGGAGCATCAGGTTCAGGGTCTGAAGCATCAGCTGTCAAGACGACATCTAAATCTCAAACGAGTGCGACTTCATCCGACGATGCTGCGAGTTTATCACATGCGACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGGCTGCTCCAGCAGCCAGTGACCGAAAAGGCGATGGAGTCAAAAGATCTGATTCCCTCTCAGAAATTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGGGACGACGAAGACTACGAGAGTGAGTAA | 1839 | 43.5 | MDPKSTDSPPSPTVHSSATKFPEVHPQAPASSGMDNVAREAPSKLSSSGITSWAKNLKISQPQSASPDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDATSKPAQPSLVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERVLTYFNGENPPGRSCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKNLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDMLPNVDNTTKKSDESSGSKSSAVDGSEVSDNQNRKSVTNEKDDVFSDSESEDGSAKSKDGASGSGSEASAVKTTSKSQTSATSSDDAASLSHATKQVSLGDGGAKQAAPAASDRKGDGVKRSDSLSEIPNSESEFKAMAADASVFTFGDDEDYESE | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11504002 | 11508959 | - | CmaCh11G017300.1 | Cma11g01730 | 304239 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 41 | 75 | - | - | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 462 | 591 | - | - | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma11g01730 | 612 | ProSiteProfiles | C2 tensin-type domain profile. | 330 | 457 | IPR014020 | - | |
Cma11g01730 | 612 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 144 | 323 | IPR029023 | - | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Cma11g01730 | 612 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 258 | 297 | IPR000387 | GO:0016311|GO:0016791 | |
Cma11g01730 | 612 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 260 | 270 | IPR016130 | GO:0016311|GO:0016791 | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 490 | 512 | - | - | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 462 | 489 | - | - | |
Cma11g01730 | 612 | SMART | PTEN_C2_2 | 328 | 456 | IPR014020 | - | |
Cma11g01730 | 612 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 157 | 324 | IPR029021 | - | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 513 | 552 | - | - | |
Cma11g01730 | 612 | MobiDBLite | consensus disorder prediction | 90 | 111 | - | - | |
Cma11g01730 | 612 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A | 15 | 612 | - | - | |
Cma11g01730 | 612 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 350 | 454 | IPR035892 | - | |
Cma11g01730 | 612 | Gene3D | Protein tyrosine phosphatase superfamily | 129 | 326 | IPR029021 | - | |
Cma11g01730 | 612 | CDD | PTP_PTEN | 154 | 318 | IPR045101 | GO:0016791 | |
Cma11g01730 | 612 | Gene3D | - | 337 | 458 | - | - | |
Cma11g01730 | 612 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 15 | 612 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01730 | Cma19g00587 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01149 | Cma-Chr11:6608799 | Cma11g01730 | Cma-Chr11:11504002 | 3.36E-47 | transposed | |
Cma14g00570 | Cma-Chr14:2850326 | Cma11g01730 | Cma-Chr11:11504002 | 4.73E-07 | transposed | |
Cma11g01730 | Cma-Chr11:11504002 | Cma19g00587 | Cma-Chr19:6516097 | 0 | wgd | |
Cma11g01730 | Cma-Chr11:11504002 | Cma07g00685 | Cma-Chr7:3010426 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01730 | K01110 | - | csv:101222304 | 1060.06 |