Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01732 ATGGCGATTTCCACCACTTTCTCCTTCTCCATCGTCGCCTTTCTAGCGCTCTTCCTATGTTTTTCCTCATCTTCATTGGCTTCTGATTCATCCAGCTTTTCCATCATCGATGAAAACGCTAAACACCACTTGGATGTCCAAATCGGATCCCCTCACCGCTCCGATGAGGAGGTTGCGGCTCTGTACGAGTCGTGGTTGGTTCACAATGGAAAGGCTTACAACGCTCTTGGCGAGAAGGAGAGACGGTTTGAGATTTTCAAGGATAATCTCAGGTTCATCGATGAACATAACAGGGAATCGCGGAGTTATAAGGTTGGATTGAACCGTTTTGCCGATCTCTCCAACGAGGAGTATCGCGCCATGTTTCTTAGCGGTCGATTGTCCCGAAAGAACCGCCTCTCCGCCACTAAGAGTCGTAGATATGCGATCACGCTTGGCGATGATCTGCCGGATCATGTTGATTGGAGGAAGAAGGGCGCTGTTACGGATGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAATCAAATCACCACCGGTGAATTGATCTCTCTGTCGGAGCAGGAGCTTGTAGACTGTGATAGATCATATAACATGGGGTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGACAATGGTGGAATTGACACTGAGGAAGATTACCCTTACAAGGGCAGAGATGGCACTTGCGATCCCAACCGGAGAAATTCTAAAGCTGTAACCATAGATGGATATGAAGATGTTCCTGAGAATGATGAGAGCTCCTTGAAAAAGGCTGTGGCTAATCAACCTGTTAGTGTTGCCATTGAAGCTGGCGGCAGGGCCTTCCAACTTTACCAATCAGGTGTCTTCAACGGACTTTGTGGAACCGAACTGGATCATGGTGTTGTTGCTGTTGGATATGGCACAGAAGATGGAAAAGATTATTGGATTGTGAGGAATTCATGGGGTAAAAACTGGGGAGAGAATGGTTATATCAAGTTGGAGAGGAATGTGGGCAACATTACCACAGGCAAGTGTGGTATAGCCATAGAGGCTTCATACCCCACCAAGACAGGAAAGAACCCACCAAAACCTGCCCCTTCTCCGCCATCCCCTGTGAGTCCCCCGAATCAATGCGACGAATACTTCTCGTGCCAGGAAGGAACAACCTGTTGCTGTATCTATAAGTATGGAAGTACCTGCTTTGGTTGGGGATGCTGCCCGCTCGAGTCTGCAACCTGTTGCGACGACCATTACAGTTGCTGCCCCCATGAATACCCCATCTGTGACCTTGATGCAGGAACTTGCCTGAAGAGCAAAGGCAGCACGACCGGAGTCAAACTGCTGAAGCGCGTTCCTGCTAAATATAACAGGGGCTGCGTTCAGAAGCTTGGCAAGATGTCCATTGGTGCTTGA 1443 48.44 MAISTTFSFSIVAFLALFLCFSSSSLASDSSSFSIIDENAKHHLDVQIGSPHRSDEEVAALYESWLVHNGKAYNALGEKERRFEIFKDNLRFIDEHNRESRSYKVGLNRFADLSNEEYRAMFLSGRLSRKNRLSATKSRRYAITLGDDLPDHVDWRKKGAVTDVKDQGQCGSCWAFSTVAAVEGINQITTGELISLSEQELVDCDRSYNMGCNGGLMDYAFQFIIDNGGIDTEEDYPYKGRDGTCDPNRRNSKAVTIDGYEDVPENDESSLKKAVANQPVSVAIEAGGRAFQLYQSGVFNGLCGTELDHGVVAVGYGTEDGKDYWIVRNSWGKNWGENGYIKLERNVGNITTGKCGIAIEASYPTKTGKNPPKPAPSPPSPVSPPNQCDEYFSCQEGTTCCCIYKYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLDAGTCLKSKGSTTGVKLLKRVPAKYNRGCVQKLGKMSIGA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11510182 11513104 - CmaCh11G017320.1 Cma11g01732 304241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01732 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Cma11g01732 480 SMART pept_c1 149 365 IPR000668 GO:0006508|GO:0008234
Cma11g01732 480 SUPERFAMILY Granulin repeat 385 419 - -
Cma11g01732 480 SMART GRAN_2 388 445 IPR000118 -
Cma11g01732 480 Pfam Granulin 399 446 IPR000118 -
Cma11g01732 480 CDD Peptidase_C1A 150 364 IPR039417 -
Cma11g01732 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 307 317 IPR025660 -
Cma11g01732 480 PANTHER CYSTEINE PROTEASE 42 394 - -
Cma11g01732 480 Pfam Papain family cysteine protease 149 365 IPR000668 GO:0006508|GO:0008234
Cma11g01732 480 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 394 - -
Cma11g01732 480 Gene3D Granulin 385 448 IPR037277 -
Cma11g01732 480 SUPERFAMILY Cysteine proteinases 54 365 IPR038765 -
Cma11g01732 480 Gene3D Cysteine proteinases 47 367 - -
Cma11g01732 480 PRINTS Papain cysteine protease (C1) family signature 167 182 IPR000668 GO:0006508|GO:0008234
Cma11g01732 480 PRINTS Papain cysteine protease (C1) family signature 309 319 IPR000668 GO:0006508|GO:0008234
Cma11g01732 480 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Cma11g01732 480 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 167 178 IPR000169 -
Cma11g01732 480 Pfam Cathepsin propeptide inhibitor domain (I29) 62 118 IPR013201 -
Cma11g01732 480 SMART Inhibitor_I29_2 62 118 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01732 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00959 Cma-Chr3:6826020 Cma11g01732 Cma-Chr11:11510182 1.03E-172 dispersed
Cma05g00052 Cma-Chr5:211386 Cma11g01732 Cma-Chr11:11510182 6.90E-111 dispersed
Cma10g00765 Cma-Chr10:3512937 Cma11g01732 Cma-Chr11:11510182 8.44E-74 dispersed
Cma11g01732 Cma-Chr11:11510182 Cma20g00586 Cma-Chr20:2780924 1.30E-102 dispersed
Cma12g00042 Cma-Chr12:161778 Cma11g01732 Cma-Chr11:11510182 2.24E-109 dispersed
Cma01g02036 Cma-Chr1:12979552 Cma11g01732 Cma-Chr11:11510182 2.27E-107 transposed
Cma11g01323 Cma-Chr11:8782232 Cma11g01732 Cma-Chr11:11510182 2.65E-130 transposed
Cma12g00438 Cma-Chr12:2287015 Cma11g01732 Cma-Chr11:11510182 3.25E-142 transposed
Cma01g01819 Cma-Chr1:12067366 Cma11g01732 Cma-Chr11:11510182 0 wgd
Cma11g01732 Cma-Chr11:11510182 Cma07g00688 Cma-Chr7:3024117 1.21E-163 wgd
Cma11g01732 Cma-Chr11:11510182 Cma09g00255 Cma-Chr9:1072704 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01732 Cma_Chr11 FPKM 112.224091 122.043968 77.036407 76.574898 19.273401 18.645264 18.641169 69.630272 65.581322 63.8181