Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01738 ATGGCCTCCATTTCTACGCCCTCCTCTGTTCTTCCCAATTCCCGGCCGGCCTTCACCGGCGCCGGATATATTTCATCTCCGTCGACTCGGTTTCGGCCTCCGACGGTCGCCACGGCATTATCTAGCCGCGATGTGGGCAGTTCTGCGGCGTATAGGGTTGGGGATTTTATGACGAAGAAGGGGAATCTGCAAGTTGTGAAGCCTTCTACTACTGTTGACCAAGCCTTGGAGGTTCTGGTGGAGAAGAGTCTATCTGGATTTCCTGTAATTGACGACGATTGGAAACTGGTCGGTGTTGTCTCAGATTACGACTTACTAGCTCTATGCGCAATTTCAGGAGTACACGTTGAAGAGATGAATATATTCCCAGACGTGAACAGTAGCTGGAAAAGGTTCAAGGAGATGCAGAAATTGTTGAGCAAGACCAACGGGGAAGTTGTAGCAGATTTGATGACGCCCGCTCCATTGGTTGTTCGTGAAGCTATGAACTTGGAAAGTGCGGCCAGGGTGTTGCTCGAAACAAAGCTCCATCGTTTGCCGGTGGTAGACTGCGATGGAAAGCTGGTGGGGATCATTACAAGAGAAGACATAGTTAGAGCTGGGCTGCACATCAAGCGCACTCACCAGAGTTAA 633 50.39 MASISTPSSVLPNSRPAFTGAGYISSPSTRFRPPTVATALSSRDVGSSAAYRVGDFMTKKGNLQVVKPSTTVDQALEVLVEKSLSGFPVIDDDWKLVGVVSDYDLLALCAISGVHVEEMNIFPDVNSSWKRFKEMQKLLSKTNGEVVADLMTPAPLVVREAMNLESAARVLLETKLHRLPVVDCDGKLVGIITREDIVRAGLHIKRTHQS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11537557 11539942 - CmaCh11G017380.1 Cma11g01738 304247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01738 210 SUPERFAMILY CBS-domain pair 50 200 IPR046342 -
Cma11g01738 210 Gene3D - 48 208 IPR046342 -
Cma11g01738 210 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE 36 208 - -
Cma11g01738 210 SMART cbs_1 62 110 IPR000644 -
Cma11g01738 210 SMART cbs_1 154 202 IPR000644 -
Cma11g01738 210 Pfam CBS domain 53 107 IPR000644 -
Cma11g01738 210 Pfam CBS domain 147 200 IPR000644 -
Cma11g01738 210 ProSiteProfiles CBS domain profile. 151 210 IPR000644 -
Cma11g01738 210 ProSiteProfiles CBS domain profile. 57 118 IPR000644 -
Cma11g01738 210 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 36 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01738 - - - csv:101203218 270.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01738 Cma-Chr11:11537557 Cma20g01000 Cma-Chr20:6089772 6.90E-75 dispersed
Cma11g01738 Cma-Chr11:11537557 Cma16g00350 Cma-Chr16:1650827 9.04E-80 wgd
Cma11g01738 Cma-Chr11:11537557 Cma04g00480 Cma-Chr4:2443402 1.93E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01738 Cma_Chr11 FPKM 0.0 1.079651 2.543895 1.700433 1.633266 1.428991 1.794452 54.867863 61.045074 58.055462