Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01739 | ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTACCGATCCAGTGGCCAATGGACAGCATGCCACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCGCATCGTGACCCTAGCATGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACAGATGCATCCGGGCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGATAAGGAGGAAGCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCAGACGATGCTGCGATGTCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTATGCGAGACCCTAACGGAATGAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAAGCTGCTAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTGTATGTTGCACTCGCGCAGAGGAAGGAAGATAGAAGAGCGAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATGTCCTCGCAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGTATGCCCCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAACGCAGCTCCAGACCATCAACGAATGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGCTTGATAATGCAGCAAAGGTAACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCAGAGGCTCTGAAAGCCAAGGTGGCAGAGGCTATGGAGGTTTTGAGAACTGTGGGTCAGCAGACAGGCAATGCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATTCCTAA | 1938 | 46.85 | MAQVPSPPQVPGTDPVANGQHATTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAAMSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGMSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIMSSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRMMLGENLYPLVEQLELDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNAAADQLASLSLSDNLDS | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11541978 | 11546095 | + | CmaCh11G017390.1 | Cma11g01739 | 304248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01739 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 306 | 383 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | Gene3D | - | 542 | 626 | - | - | |
Cma11g01739 | 645 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 25 | 620 | IPR006515 | GO:0003723 | |
Cma11g01739 | 645 | Gene3D | - | 193 | 287 | IPR012677 | - | |
Cma11g01739 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 203 | 280 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | CDD | RRM2_I_PABPs | 110 | 186 | IPR045305 | - | |
Cma11g01739 | 645 | SUPERFAMILY | PABC (PABP) domain | 488 | 637 | IPR036053 | GO:0003723 | |
Cma11g01739 | 645 | SMART | rrm1_1 | 307 | 379 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | SMART | rrm1_1 | 204 | 276 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | SMART | rrm1_1 | 25 | 98 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | SMART | rrm2_1 | 113 | 185 | IPR003954 | GO:0003676 | |
Cma11g01739 | 645 | SMART | rrm2_1 | 307 | 379 | IPR003954 | GO:0003676 | |
Cma11g01739 | 645 | SMART | rrm2_1 | 25 | 98 | IPR003954 | GO:0003676 | |
Cma11g01739 | 645 | SMART | rrm2_1 | 204 | 276 | IPR003954 | GO:0003676 | |
Cma11g01739 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 184 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | Pfam | Poly-adenylate binding protein, unique domain | 555 | 619 | IPR002004 | GO:0003723 | |
Cma11g01739 | 645 | CDD | RRM1_I_PABPs | 25 | 104 | - | - | |
Cma11g01739 | 645 | Gene3D | - | 114 | 192 | IPR012677 | - | |
Cma11g01739 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 24 | 193 | IPR035979 | GO:0003676 | |
Cma11g01739 | 645 | CDD | RRM3_I_PABPs | 202 | 281 | - | - | |
Cma11g01739 | 645 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 547 | 624 | IPR002004 | GO:0003723 | |
Cma11g01739 | 645 | PANTHER | RNA BINDING PROTEIN | 14 | 629 | - | - | |
Cma11g01739 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 203 | 386 | IPR035979 | GO:0003676 | |
Cma11g01739 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 102 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 14 | 629 | - | - | |
Cma11g01739 | 645 | CDD | RRM4_I_PABPs | 305 | 383 | - | - | |
Cma11g01739 | 645 | SMART | poly_2 | 559 | 622 | IPR002004 | GO:0003723 | |
Cma11g01739 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 308 | 376 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 181 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 96 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 205 | 273 | IPR000504 | GO:0003723 | |
Cma11g01739 | 645 | Gene3D | - | 288 | 391 | IPR012677 | - | |
Cma11g01739 | 645 | Gene3D | - | 14 | 113 | IPR012677 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01739 | Cma19g00596 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01739 | Cma-Chr11:11541978 | Cma15g00568 | Cma-Chr15:2660471 | 0 | dispersed | |
Cma06g01612 | Cma-Chr6:10032264 | Cma11g01739 | Cma-Chr11:11541978 | 7.94E-24 | transposed | |
Cma14g01521 | Cma-Chr14:11514908 | Cma11g01739 | Cma-Chr11:11541978 | 3.53E-24 | transposed | |
Cma11g01739 | Cma-Chr11:11541978 | Cma16g00351 | Cma-Chr16:1656513 | 0 | wgd | |
Cma11g01739 | Cma-Chr11:11541978 | Cma19g00596 | Cma-Chr19:6565911 | 0 | wgd | |
Cma11g01739 | Cma-Chr11:11541978 | Cma04g00481 | Cma-Chr4:2449726 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01739 | K13126 | - | csv:101223017 | 1097.03 |