Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01739 ATGGCTCAGGTTCCATCTCCACCTCAAGTTCCCGGTACCGATCCAGTGGCCAATGGACAGCATGCCACGACGTCGTTGTATGTTGGAGATCTTGACGTGAATGTCACCGATTCGCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTTGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCTGTGGATGCAACAAGGGCATTAGATGCGCTAAACTTCACCCCTTTGAATGGAAATCCTATAAGGGTTATGTTTTCGCATCGTGACCCTAGCATGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCATGATACATTTTCTGCATTTGGAAGCATTTTATCCTGCAAGGTTGCTACAGATGCATCCGGGCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGATAAGGAGGAAGCTGCCTTAAAAGCCATAGAGAAGTTGAATGGAATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCGTTCGCAAGCAAGAACGAGAAAGTGTCAGTGAGAAAACAAAGTTTAATAATGTTTTTGTTAAGAATCTGTCGGAAACTACATCTGATGAAGATTTACAGAATATGTTTGAGGAGTTTGGACCAATAACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAAATGCTTTGGCTTTGTAAACTTTGAGAATGCAGACGATGCTGCGATGTCTGTTGAAGCACTTAATGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAATTGAAAAATCGGTTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTACAAACCTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATACAAGGTTATGCGAGACCCTAACGGAATGAGCAGAGGTTCTGGATTTGTTGCATTCTCAACTCCTGAAGAAGCTGCTAGAGCTCTTGGAGAGATGAATGGAAGAATAATTGTGAGCAAACCTCTGTATGTTGCACTCGCGCAGAGGAAGGAAGATAGAAGAGCGAGGTTGCAGGCACAGTTTTCCCAATTGCAGCCAATGGCAATGGCATCTTCAGTTGCACCTCGTGGCATGCCAATGTATCCTCCAGGTGCTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCGCCTGCTATTATGTCCTCGCAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCCGGGCCAGCAAGGGCAAAGATCTGGTGGCAGACGTGCTGGTGCCATTCAGCAAACCCAGCAGCCCGGTCCAATGATGCAGCAGCAGATGCTCCCACGAGGACGTGTGTACCGTTATCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCTGGAGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGTATGCCCCCACGGGATACTGTTCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTCGCAAACGCAGCTCCAGACCATCAACGAATGATGCTGGGGGAAAATCTGTATCCACTCGTGGAACAGCTAGAGCTTGATAATGCAGCAAAGGTAACCGGAATGCTACTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCAGAGGCTCTGAAAGCCAAGGTGGCAGAGGCTATGGAGGTTTTGAGAACTGTGGGTCAGCAGACAGGCAATGCAGCAGCTGATCAATTGGCTTCACTGTCCCTGAGTGACAACCTTGATTCCTAA 1938 46.85 MAQVPSPPQVPGTDPVANGQHATTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPVDATRALDALNFTPLNGNPIRVMFSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDKEEAALKAIEKLNGMLLNDKQVFVGPFVRKQERESVSEKTKFNNVFVKNLSETTSDEDLQNMFEEFGPITSVVVMRDGDGKSKCFGFVNFENADDAAMSVEALNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGTNLYVKNLDDSIDDDKLKELFSAFGTITSYKVMRDPNGMSRGSGFVAFSTPEEAARALGEMNGRIIVSKPLYVALAQRKEDRRARLQAQFSQLQPMAMASSVAPRGMPMYPPGAPGIGQQIFYGQAPPAIMSSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQPGQQGQRSGGRRAGAIQQTQQPGPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDTVHPQPIPVGALASALANAAPDHQRMMLGENLYPLVEQLELDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVGQQTGNAAADQLASLSLSDNLDS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11541978 11546095 + CmaCh11G017390.1 Cma11g01739 304248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01739 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Cma11g01739 645 Gene3D - 542 626 - -
Cma11g01739 645 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 620 IPR006515 GO:0003723
Cma11g01739 645 Gene3D - 193 287 IPR012677 -
Cma11g01739 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Cma11g01739 645 CDD RRM2_I_PABPs 110 186 IPR045305 -
Cma11g01739 645 SUPERFAMILY PABC (PABP) domain 488 637 IPR036053 GO:0003723
Cma11g01739 645 SMART rrm1_1 307 379 IPR000504 GO:0003723
Cma11g01739 645 SMART rrm1_1 204 276 IPR000504 GO:0003723
Cma11g01739 645 SMART rrm1_1 25 98 IPR000504 GO:0003723
Cma11g01739 645 SMART rrm1_1 113 185 IPR000504 GO:0003723
Cma11g01739 645 SMART rrm2_1 113 185 IPR003954 GO:0003676
Cma11g01739 645 SMART rrm2_1 307 379 IPR003954 GO:0003676
Cma11g01739 645 SMART rrm2_1 25 98 IPR003954 GO:0003676
Cma11g01739 645 SMART rrm2_1 204 276 IPR003954 GO:0003676
Cma11g01739 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 184 IPR000504 GO:0003723
Cma11g01739 645 Pfam Poly-adenylate binding protein, unique domain 555 619 IPR002004 GO:0003723
Cma11g01739 645 CDD RRM1_I_PABPs 25 104 - -
Cma11g01739 645 Gene3D - 114 192 IPR012677 -
Cma11g01739 645 SUPERFAMILY RNA-binding domain, RBD 24 193 IPR035979 GO:0003676
Cma11g01739 645 CDD RRM3_I_PABPs 202 281 - -
Cma11g01739 645 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 547 624 IPR002004 GO:0003723
Cma11g01739 645 PANTHER RNA BINDING PROTEIN 14 629 - -
Cma11g01739 645 SUPERFAMILY RNA-binding domain, RBD 203 386 IPR035979 GO:0003676
Cma11g01739 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Cma11g01739 645 PANTHER POLYADENYLATE-BINDING PROTEIN 14 629 - -
Cma11g01739 645 CDD RRM4_I_PABPs 305 383 - -
Cma11g01739 645 SMART poly_2 559 622 IPR002004 GO:0003723
Cma11g01739 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Cma11g01739 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Cma11g01739 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Cma11g01739 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Cma11g01739 645 Gene3D - 288 391 IPR012677 -
Cma11g01739 645 Gene3D - 14 113 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01739 Cma19g00596 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01739 Cma-Chr11:11541978 Cma15g00568 Cma-Chr15:2660471 0 dispersed
Cma06g01612 Cma-Chr6:10032264 Cma11g01739 Cma-Chr11:11541978 7.94E-24 transposed
Cma14g01521 Cma-Chr14:11514908 Cma11g01739 Cma-Chr11:11541978 3.53E-24 transposed
Cma11g01739 Cma-Chr11:11541978 Cma16g00351 Cma-Chr16:1656513 0 wgd
Cma11g01739 Cma-Chr11:11541978 Cma19g00596 Cma-Chr19:6565911 0 wgd
Cma11g01739 Cma-Chr11:11541978 Cma04g00481 Cma-Chr4:2449726 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01739 K13126 - csv:101223017 1097.03