Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01740 ATGGTGATTGCGCCGGCTGCCGCGCCTTCGATCGATGGAGATGCTGCTCATGATGCGGCCTCTGTTGATGCAGTTCAAGCATCGGTGTCAGGGAACGAAGCGAACTTGTCCACGGCTTTTCCTGGACCCAAGTATGACGACGATGAAGAGGAAGACGACGTCTGCCGGATCTGTAGGAACCCTAAAGATGCGGATAACCCGCTAAGTTATCCCTGCGCTTGCAGCGGCAGTATCAAGTTTGTTCACCAGGACTGTCTCCTTCAATGGCTAAGTCACAGCAACGCCCGTCAGTGCGAGGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCCGAGAATGCTCCATCAAGGCTTCCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGCCTCAGTTTTGTGCTCTCTGTTTGGCTCCTCATCATACCTTTCGTTACATTTTGGATATGGCGGTTGACTTTCGTGAGGAGTTTTGGGGAAGCCCAGAGATTATTCTTGAGTCATTTGTCTGCTACTGTTGTTCTTACTGATTGTCTTCATGGCTTCCTGCTTTCTGCTAGCATTGTATTTATATTTCTTGGAGCTACCTCCTTGAGAGATTACTTCAGACATTTACGGGAGCTTGGAGGTCAGGATGGTGAGCGAGAAGATGATGCAGATAGAAATGGTGCTCGTGCTTTCAGAAGACCTCCTGGACAAGCTAATAGAAATTTTGCTGGTGATGCAATTGGTGAAGATGCTGGTGGAGCCCCGGTACTTGGTGGGGCGGGTCAAATGATTAGGAGGAATGCAGAAAATGTTGCTGCTCGGTTGGAAATGCAGGCTGCTCGTCTTGAGGCTCATGTTGAACAGATGTTTGATGTGGAAGATGCTGATGGTGCGGAAGATGTTCCCTTTGATGAGCTGGTTGGCATGCAGGGGCCTGTGTTTCATTTAGTTGAAAATGCATTCACAGTTTTGGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACGCTAGGTCGGATCATACTTCATTATGTATCATGGATTTTCTCTTCAGCCAGTGGTCCAGTTTTCTCAACAATGATGCCACTTACAGAGTCAGCTCTCTCCTTGGTCAATATTACATTGAAAAATGCATTGACAGCTGTTGCAAACTTGACATCAGATGGTAAAGAAAGTGGTCTACTTGATCAGGTTGCAGAAATGTTTAAAGTCAACTCCAGTACACTAAACAATGGCACAAACAACATAACTGCTCCACTGTCGGTGGATGTTTTGAAAGGGTTAGCTACTGCATCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACGTATTTATATTTTCGCTAGTTTTCTTCTATCTTGGCACTGTTGCTTTGATTCGATACACACGGGGCGAGCCTTTGACAATGGGGAGGTTGTATGGCATTACATCTGTAGCCGAGGCCATCCCTTCTCTCCTTAGGCAGTTCATGGCTGCGATGAGGCATTTGATGACAATGGTTAAGGTTGCTTTCCTTCTGGTCATAGAACTTGGGGTATTCCCCTTGATGTGTGGCTGGTGGCTTGACGTTTGTACTGTAAAGATGTTTGGCAAGTCAATGGCTCAGCGTGTTCAGTTCTTTTCCGTTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTGTATATGCTACAAATAAGTATATTTGTCAGCCTTCTTCGTGGGGTTTTGCGCAGTGGAGTTTTGTACTTCCTTCGCGATCCTGCAGATCCGAACTATAATCCTTTCCGAGATCTAATTGATGATCCTATGCACAAGCATGCTCGCCGTGTTCTACTATCTGTTGCAGTGTATGGGAGTTTAATTGTAATGCTGGTATTTTTACCTGTCAAACTTGCTATGAGGATGGTGCCCTCCATTTTTCCTCTTGATATATCAGTATCGGACCCCTTCACAGAGATTCCAGCTGACATGCTTCTCTTTCAAATCTGCATTCCTTTTGCTATAGAACATTTTAAATTGAGAACAACAATCAAATCCCTTCTCCGCTGCTGGTTTACTGTAGTTGGTTGGGCCCTTGGATTGACAGATTATTTACTTCCCAGAACTGAAGAAAATGTTGGCCAGGAAAATGGGAATGGAGAGCCTGGGTTGCAAGATCTGCAAGTGATACATCATCTAGGTGGTCCGGATCAGGCTCTGGTGGCTCATGCTGCAGCTAACGAGCCGAACCAAGTCGGTCCTGCATCTGGGAACTTGACTAATGAGGAGTACGATAATGAAGAGCAGTCTGATTCAGAGAGGTATAGCTTTGCTCTCCGCATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTCTCTTCAACTCAGCACTGATAGTGGTACCAACTTCACTTGGACGGGCGCTCTTCAATGCTATTCCGCTTCTTCCCATCACACATGGTATCAAGTGTAATGATATGTATGCTTTTGTGATCGGGAGCTACGTTATCTGGACAGTCATAGCTGGTGCTAGATATACCATTGAATATGTCAGAGCAAGGAGAGTGACAGTTTTGTTGAGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTACTATCAATATGGATCTTTCTCATTCCAGTTCTGATTGGCTTGTTATTTGAGCTTCTGGTCATTGTGCCTATGCGAGTTCCAGTGGATGAAAACCCAGTTTTCCTCTTGTACCAAGACTGGGCATTGGGCTTAATTTTTCTTAAGATCTGGACGAGACTGGTAATGTTAGATCATATGATACCACTGGTGGATGACAGTTGGAGAGTAAAGTTCGAACGAGTAAGAGAAGATGGCTTCTCGAGGCTTCAAGGACTCTGGGTTTTGCGGGAAATAGTCGTGCCAATTATAATGAAGCTACTGACAGCACTATGCGTACCTTACGTTCTAGCTAGAGGAGTATTTCCTGTGTTCGGGTACCCACTGATCGTCAACTCGGCTGTTTATCGGTTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTATTTCTGTGCTAAGAGATTTCATGTTTGGTTCTCCAACCTTCATAACTCCATTCGCGACGATCGTTATCTCATCGGCCGTCGACTCCATAACTTCGGTGAAGAAACTAGAGAAAAGGCGAGCGATGCAGCAGGGACTTCATCATCTAAGATGCAAAATGCTGGCCTTGCAGTGGGCGGTGAAGGATTGCGGCTGAGACGTGTTGGTAACTGA 3276 45.33 MVIAPAAAPSIDGDAAHDAASVDAVQASVSGNEANLSTAFPGPKYDDDEEEDDVCRICRNPKDADNPLSYPCACSGSIKFVHQDCLLQWLSHSNARQCEVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFVTFWIWRLTFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDGEREDDADRNGARAFRRPPGQANRNFAGDAIGEDAGGAPVLGGAGQMIRRNAENVAARLEMQAARLEAHVEQMFDVEDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFTLGRIILHYVSWIFSSASGPVFSTMMPLTESALSLVNITLKNALTAVANLTSDGKESGLLDQVAEMFKVNSSTLNNGTNNITAPLSVDVLKGLATASRLSDVTTLAVGYVFIFSLVFFYLGTVALIRYTRGEPLTMGRLYGITSVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTVKMFGKSMAQRVQFFSVSPLASSLVHWAVGIVYMLQISIFVSLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRCWFTVVGWALGLTDYLLPRTEENVGQENGNGEPGLQDLQVIHHLGGPDQALVAHAAANEPNQVGPASGNLTNEEYDNEEQSDSERYSFALRIVLLLVVAWMTLLLFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTVIAGARYTIEYVRARRVTVLLSQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDENPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVLARGVFPVFGYPLIVNSAVYRFAWIGCLCVSMLYFCAKRFHVWFSNLHNSIRDDRYLIGRRLHNFGEETREKASDAAGTSSSKMQNAGLAVGGEGLRLRRVGN 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11546724 11552235 - CmaCh11G017400.1 Cma11g01740 304249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01740 1091 ProSiteProfiles Zinc finger RING-type profile. 55 102 IPR001841 -
Cma11g01740 1091 Coils Coil 272 292 - -
Cma11g01740 1091 MobiDBLite consensus disorder prediction 223 254 - -
Cma11g01740 1091 SMART ringv_2 54 102 IPR011016 GO:0008270
Cma11g01740 1091 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 44 1043 - -
Cma11g01740 1091 PANTHER SSM4 PROTEIN 44 1043 - -
Cma11g01740 1091 SUPERFAMILY RING/U-box 49 105 - -
Cma11g01740 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 113 IPR013083 -
Cma11g01740 1091 ProSiteProfiles Zinc finger RING-CH-type profile. 47 108 IPR011016 GO:0008270
Cma11g01740 1091 CDD RING_CH-C4HC3_MARCH6 54 103 - -
Cma11g01740 1091 Pfam RING-variant domain 55 101 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01740 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - csv:101222781 1965.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01740 Cma19g00597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01740 Cma-Chr11:11546724 Cma17g00301 Cma-Chr17:1607153 2.04E-12 dispersed
Cma11g01740 Cma-Chr11:11546724 Cma19g00597 Cma-Chr19:6569919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01740 Cma_Chr11 FPKM 22.997458 24.813728 32.958988 34.219341 20.503426 19.861 19.915287 44.158741 41.359184 48.821754