Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01744 ATGGCGACTTACTCGATACCAACTGCTCTGCTCAAGCTCTCTCCCATGGCGGTACCTGCTACCACCACTGTTTCATCTCCTTCGTTTACTCTGACGGCATCCAAACAGCGGAAAACAATTGCCACGAAACTCTCTGCGACAGCCACGAGAACCCTCTCTCCAACTTCTCCTTCAACGCTATCGAGTTCCGGTACGATGACTGCGAGTTCATCTCCATCTATGCCTCTCAAGAAGGTTCTGGTTCCTATCGGATTTGGAACTGAGGAAATGGAAGCTGTTATTATAGTTGATGTTTTGCGTCTAGCAGGGGCCGCCGTGACTGTGGCGTCGGTGGAACCAGAGCTTGAAATCGAAGCTTCTGGGGGTATGAAATTGGTTGCTGATACCTTAATCAGTGCATGTTCCAATGAAGTTTTCGACCTTGTAGCTTTGCCCGGAGGGATGCCTGGCTCTGTAAGATTAAGAGATTGTGAAATACTGCGGAAGATTACCAGTAGACAAGCTGAAGAAAAGAGACTGTATGGAGCGATATGTGCTGCCCCAGCAGTCACCCTTCTGCCGTGGGGACTTATAAGAAGAAAACAGACAACATGTCACCCTGCATTCAATGACAAGCTCCCACAATTTTGGGCTGTTAAATCAAATATTCATGTGTCGGGAGAGCTCACAACGAGCCGTGGCCCTGGAACTACTTTCGGATTTTCTTTAGCTTTAGTTGAGCAGCTCTATGGAGAATCAGTTGCTAAGGAGCTTGGAGAATCTCTGCTAATGGATTCTGAGAATGATTGCCCTCGAAAGGAAGAATTCAACAAAGTTGACTGGTCTGTTGATCATACTCCTCGTGTTCTTATCCCAATTGCAAATGGCTCTCAAGGGATTGAATTAGTAACCATTGCTGATATTTTGCGACGGGCTAAGGTGGATGTCGTGATTGCTTCAGTTGAAAAGTCACGTCAGATTTTAGCATCGACAGGAACAAAAGTAGTTGCTGACGAGTTGATTAAAGAAGCTGCAGAATCAATATATGATCTAATTATTCTTCCGGGGGGAGCTGCAGCAGATGAGCGGCTTAGCAAATCCCGGATCCTTAAGAGAATGCTCAAAGAACAAGACTCCGCCAAAAGAATATACGGTGCAGTCTGCTCTTCACCTGCAGTCCTGTTCAAACAGGGTCTACTGAAGGACAAAAGAGCAATTGCTCATCCATCTCTGGAAACCGAGTCGACCCATGAAGTAAATGCTGCAAAAGTAATTATTGATGGTAAACTGATAACGAGCAAGGGGTTTTACAATGTAATAGATTTTGCGTTGGCTATTGTAAGCAAGCTTTTTGGCCATGCGAGAGCGAGAAGTGTAGCAGAAGGTTTGGTTTTTGAATATCCTAGAGCTGGATGA 1395 45.52 MATYSIPTALLKLSPMAVPATTTVSSPSFTLTASKQRKTIATKLSATATRTLSPTSPSTLSSSGTMTASSSPSMPLKKVLVPIGFGTEEMEAVIIVDVLRLAGAAVTVASVEPELEIEASGGMKLVADTLISACSNEVFDLVALPGGMPGSVRLRDCEILRKITSRQAEEKRLYGAICAAPAVTLLPWGLIRRKQTTCHPAFNDKLPQFWAVKSNIHVSGELTTSRGPGTTFGFSLALVEQLYGESVAKELGESLLMDSENDCPRKEEFNKVDWSVDHTPRVLIPIANGSQGIELVTIADILRRAKVDVVIASVEKSRQILASTGTKVVADELIKEAAESIYDLIILPGGAAADERLSKSRILKRMLKEQDSAKRIYGAVCSSPAVLFKQGLLKDKRAIAHPSLETESTHEVNAAKVIIDGKLITSKGFYNVIDFALAIVSKLFGHARARSVAEGLVFEYPRAG 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11572051 11577585 - CmaCh11G017440.1 Cma11g01744 304253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01744 464 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 57 461 - -
Cma11g01744 464 SUPERFAMILY Class I glutamine amidotransferase-like 77 259 IPR029062 -
Cma11g01744 464 CDD GATase1_DJ-1 79 242 - -
Cma11g01744 464 Gene3D - 274 463 IPR029062 -
Cma11g01744 464 Gene3D - 72 269 IPR029062 -
Cma11g01744 464 SUPERFAMILY Class I glutamine amidotransferase-like 281 462 IPR029062 -
Cma11g01744 464 CDD GATase1_DJ-1 282 443 - -
Cma11g01744 464 PANTHER PROTEIN DJ-1 HOMOLOG C 57 461 - -
Cma11g01744 464 Pfam DJ-1/PfpI family 77 241 IPR002818 -
Cma11g01744 464 Pfam DJ-1/PfpI family 281 441 IPR002818 -
Cma11g01744 464 MobiDBLite consensus disorder prediction 45 73 - -
Cma11g01744 464 TIGRFAM not_thiJ: DJ-1 family protein 78 251 IPR006287 -
Cma11g01744 464 TIGRFAM not_thiJ: DJ-1 family protein 281 454 IPR006287 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01744 - - - csv:101204195 724.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00572 Cma-Chr4:2913343 Cma11g01744 Cma-Chr11:11572051 1.37E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g402 . . . . . Bpe12g00056 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1088 . . . . . . . . Blo13g00575 Bda15g00034 . . . . . . . . Cma11g01744 . Car11g01096 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010954 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01744 Cma_Chr11 FPKM 2.197955 2.186424 9.446702 8.785848 14.537621 16.049082 14.392559 13.456678 12.399516 13.460612