Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01757 ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAGCCACACGATATCTCGTCCTTCAGTGTTAGAAGGTCCAGCCGATTTGCGGATAAACCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGCAACAGAAGTTATAGAAGGACATATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGATTCTAGATACCCAAGTTTTGTGAAGCCAATGCTTCAGTCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGCAACACCTTCCCCGTGAGGATGAAATGGTTACTCTGCTGGACGAGGATGGAAATGAGTTCCAAACAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTGCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTGATTACCTAG 657 46.73 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSYRRTYQRRDLLNRVYASHEERQYAIDRARDLQSSLDSRYPSFVKPMLQSHVTGGFWLGLPVQFCKQHLPREDEMVTLLDEDGNEFQTKYLAEKTGLSGGWRGFAIDHQLVDGDALVFHLTKPTEFKVIT 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11718981 11720320 - CmaCh11G017570.1 Cma11g01757 304266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01757 218 MobiDBLite consensus disorder prediction 32 47 - -
Cma11g01757 218 ProSiteProfiles B3 DNA-binding domain profile. 131 218 IPR003340 GO:0003677
Cma11g01757 218 SUPERFAMILY DNA-binding pseudobarrel domain 124 217 IPR015300 -
Cma11g01757 218 SMART B3_2 131 217 IPR003340 GO:0003677
Cma11g01757 218 Coils Coil 6 33 - -
Cma11g01757 218 MobiDBLite consensus disorder prediction 31 88 - -
Cma11g01757 218 CDD B3_DNA 129 216 IPR003340 GO:0003677
Cma11g01757 218 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 2 216 - -
Cma11g01757 218 Gene3D - 105 218 IPR015300 -
Cma11g01757 218 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 216 IPR044837 -
Cma11g01757 218 Pfam B3 DNA binding domain 131 215 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01757 Cma19g00610 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01757 Cma-Chr11:11718981 Cma12g00528 Cma-Chr12:2739439 7.52E-75 dispersed
Cma11g01757 Cma-Chr11:11718981 Cma19g00610 Cma-Chr19:6650761 6.34E-126 wgd
Cma11g01757 Cma-Chr11:11718981 Cma04g00497 Cma-Chr4:2552020 3.77E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35916 PF02362 B3 5.20E-17 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01757 - - csv:101206354 367.466