Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01757 | ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAGCCACACGATATCTCGTCCTTCAGTGTTAGAAGGTCCAGCCGATTTGCGGATAAACCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGCAACAGAAGTTATAGAAGGACATATCAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCACGAGACCTTCAATCTAGCCTGGATTCTAGATACCCAAGTTTTGTGAAGCCAATGCTTCAGTCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGCAACACCTTCCCCGTGAGGATGAAATGGTTACTCTGCTGGACGAGGATGGAAATGAGTTCCAAACAAAATACCTTGCCGAGAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTGCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCACTTAACTAAGCCAACTGAATTCAAGGTGATTACCTAG | 657 | 46.73 | MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSYRRTYQRRDLLNRVYASHEERQYAIDRARDLQSSLDSRYPSFVKPMLQSHVTGGFWLGLPVQFCKQHLPREDEMVTLLDEDGNEFQTKYLAEKTGLSGGWRGFAIDHQLVDGDALVFHLTKPTEFKVIT | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11718981 | 11720320 | - | CmaCh11G017570.1 | Cma11g01757 | 304266 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01757 | 218 | MobiDBLite | consensus disorder prediction | 32 | 47 | - | - | |
Cma11g01757 | 218 | ProSiteProfiles | B3 DNA-binding domain profile. | 131 | 218 | IPR003340 | GO:0003677 | |
Cma11g01757 | 218 | SUPERFAMILY | DNA-binding pseudobarrel domain | 124 | 217 | IPR015300 | - | |
Cma11g01757 | 218 | SMART | B3_2 | 131 | 217 | IPR003340 | GO:0003677 | |
Cma11g01757 | 218 | Coils | Coil | 6 | 33 | - | - | |
Cma11g01757 | 218 | MobiDBLite | consensus disorder prediction | 31 | 88 | - | - | |
Cma11g01757 | 218 | CDD | B3_DNA | 129 | 216 | IPR003340 | GO:0003677 | |
Cma11g01757 | 218 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 | 2 | 216 | - | - | |
Cma11g01757 | 218 | Gene3D | - | 105 | 218 | IPR015300 | - | |
Cma11g01757 | 218 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 2 | 216 | IPR044837 | - | |
Cma11g01757 | 218 | Pfam | B3 DNA binding domain | 131 | 215 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01757 | Cma19g00610 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01757 | Cma-Chr11:11718981 | Cma12g00528 | Cma-Chr12:2739439 | 7.52E-75 | dispersed | |
Cma11g01757 | Cma-Chr11:11718981 | Cma19g00610 | Cma-Chr19:6650761 | 6.34E-126 | wgd | |
Cma11g01757 | Cma-Chr11:11718981 | Cma04g00497 | Cma-Chr4:2552020 | 3.77E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35916 | PF02362 | B3 | 5.20E-17 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01757 | - | - | csv:101206354 | 367.466 |