Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g01767 | ATGCCTTCTGTTTCGCCTAAATTCACCTGGGATTTTCGTCCCCAAACCGTCTCTGATTTCCTCCATCAGATTTCCCTGCTTGCCAATGCTTCTGACCGTGTCTCCAGGCTCGGTGATTTCATCAACAGCTTGGAGGAAGAAATGAAGAAGATCGATGCCTTCAAGCGCGAGCTCCCCTTCTGTATGCTTCTATTGAACGATGCAATCCTTGCTTTGAAGGGCTCTTCTCTGCAATGTGTTTCTTCTTCTTGTTCTTCCCCAAAGACCAAGCCAGTTCTGGAGGAGTTCATTTCATTGAACAAGGATTCCTCTAATGACAATGAGAAGAAACAGGATTGTAGAGATAAGAAGGAATGGATGAGCTCTGTTCAGCTATGGAACACTGATGACTTTCAAAACACTCAAACCAAAACCAAGAGAAACGAGGGGTGTGGGTATTTAGCTACCACTGCAGAGGATAGATTTCCACCATGTAGAATCAAGAATGAGGAGAGATTATTTGTTGGGTTCAAGTCATCTTCTTCTGCTTTTCCAGCCATGGCTGCTGTGAACAAGCAAGAGAAGATGGAGTCTCCCATGTGTGCACTTTCTTTGGTCACTCCCAGTTTGAAGAATCCTAAACAAGAATTGGGTTCCTGTGTTTTGGGGTCGAGTGGCAACGGAGTGACTTTGACGACTGCTCCCGATGCTCTGTCGAATCTACGCACGGTGTTGCCACCACAGCATCAGCAGCCTGCCCGGAAGCAGAGGAGGTGCTGGTCTCCGGAGTTGCATCGACGATTCGTGAATGCCTTGCAGCAACTTGGAGGTTCACAAGTTGCAACGCCGAAGCAAATAAGAGAGTTGATGCAGGTAGATGGCCTGACCAATGATGAAGTAAAAAGTCATTTACAAAAATACCGTCTTCATACACGACGACTTCCCTCGACTCCAGCTACCGGAGCAGCAGACCGATCTCCAGTCGTTCTAGGAGATTTATGGACATCCCAAGATGGGTGTGGTGAGTCCTCAAAAGTGAGCAGCTCCCAGTCAGCCTCACCGCAAGGTCCATTCCAGTTGGGTGGAAACGGAGGGTATTCGACGACGGGAGGCGACAGTATGGAGGACGAGGAAGATACAAAATCCGAAAGCTACGAGTACTTGAAAACCGAGGCTCACACAAGCAAAAGATGA | 1173 | 47.91 | MPSVSPKFTWDFRPQTVSDFLHQISLLANASDRVSRLGDFINSLEEEMKKIDAFKRELPFCMLLLNDAILALKGSSLQCVSSSCSSPKTKPVLEEFISLNKDSSNDNEKKQDCRDKKEWMSSVQLWNTDDFQNTQTKTKRNEGCGYLATTAEDRFPPCRIKNEERLFVGFKSSSSAFPAMAAVNKQEKMESPMCALSLVTPSLKNPKQELGSCVLGSSGNGVTLTTAPDALSNLRTVLPPQHQQPARKQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSTPATGAADRSPVVLGDLWTSQDGCGESSKVSSSQSASPQGPFQLGGNGGYSTTGGDSMEDEEDTKSESYEYLKTEAHTSKR | 390 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 11829593 | 11831986 | - | CmaCh11G017670.1 | Cma11g01767 | 304276 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g01767 | 390 | Gene3D | - | 247 | 305 | - | - | |
| Cma11g01767 | 390 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 247 | 305 | IPR017930 | - | |
| Cma11g01767 | 390 | MobiDBLite | consensus disorder prediction | 375 | 390 | - | - | |
| Cma11g01767 | 390 | MobiDBLite | consensus disorder prediction | 330 | 363 | - | - | |
| Cma11g01767 | 390 | Pfam | Myb-like DNA-binding domain | 250 | 301 | IPR001005 | - | |
| Cma11g01767 | 390 | PANTHER | TRANSCRIPTION FACTOR HHO6 | 4 | 382 | - | - | |
| Cma11g01767 | 390 | SUPERFAMILY | Homeodomain-like | 246 | 306 | IPR009057 | - | |
| Cma11g01767 | 390 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 4 | 382 | IPR044787 | GO:0003700|GO:0006355 | |
| Cma11g01767 | 390 | MobiDBLite | consensus disorder prediction | 326 | 390 | - | - | |
| Cma11g01767 | 390 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 248 | 303 | IPR006447 | GO:0003677 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g01767 | - | - | - | csv:101221044 | 575.859 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma11g01767 | Cma20g00887 | CCT | |
| Cma11g01767 | Cma19g00623 | CST |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00993 | Cma-Chr3:6999939 | Cma11g01767 | Cma-Chr11:11829593 | 6.31E-73 | dispersed | |
| Cma05g01320 | Cma-Chr5:9980785 | Cma11g01767 | Cma-Chr11:11829593 | 7.07E-53 | dispersed | |
| Cma10g00587 | Cma-Chr10:2679417 | Cma11g01767 | Cma-Chr11:11829593 | 3.20E-55 | dispersed | |
| Cma11g00582 | Cma-Chr11:2799892 | Cma11g01767 | Cma-Chr11:11829593 | 4.36E-55 | dispersed | |
| Cma11g01767 | Cma-Chr11:11829593 | Cma20g00887 | Cma-Chr20:4264375 | 3.89E-107 | dispersed | |
| Cma12g01229 | Cma-Chr12:9608620 | Cma11g01767 | Cma-Chr11:11829593 | 9.56E-57 | dispersed | |
| Cma11g01767 | Cma-Chr11:11829593 | Cma19g00623 | Cma-Chr19:6734560 | 3.08E-178 | wgd | |
| Cma11g01767 | Cma-Chr11:11829593 | Cma07g00721 | Cma-Chr7:3181175 | 6.79E-80 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g468 | . | Blo15g00726 | Bda06g01033 | Bda08g00828 | Bpe07g00396 | Bpe12g00065 | . | Bma12g00476 | Cmo19g00641 | Cmo11g01344 | . | Cma20g00887 | . | Car20g00764 | Sed10g2052 | Cpe04g00264 | Cpe15g00505 | Bhi05g01152 | Tan02g0881 | Cmetu01g1216 | . | Hepe02g0566 | . | . | Cla02g00577 | Cam02g0608 | Cec02g0608 | Cco02g0623 | Clacu02g0604 | Cmu02g0602 | Cre02g0932 | Cone12ag1112 | Cone8ag1154 | Cone3ag1117 | Cone10ag1128 | Lsi10g00313 | Csa07g00784 | Chy11g00433 | Cme01g00026 | . | Blo13g00566 | . | Bda14g00523 | . | . | Bma03g00524 | . | Sed01g0333 | . | Cmo20g00894 | Cma11g01767 | Cma19g00623 | Car11g01081 | Car19g00475 | . | . | Bhi10g02074 | Tan05g1390 | Cmetu11g1909 | . | Hepe08g1062 | . | . | Cla09g01716 | Cam09g1810 | Cec09g1872 | Cco09g1965 | . | . | Cre01g0695 | Lsi11g01029 | Csa02g01203 | Chy01g00032 | Cme11g00507 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001343 | 4 | 2 | 2 | 2 | 2 | 2 | 4 | 2 | 2 | 2 | 2 | 2 | 4 | 2 | 2 | 4 | 2 | 4 | 4 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 4 | 3 | 1 | 74 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35917 | PF00249 | Myb_DNA-binding | 6.30E-07 | CL0123 | Cma | TF |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma11g01767 | Cma_Chr11 | FPKM | 17.774246 | 21.83902 | 11.624665 | 13.23806 | 3.740573 | 4.845102 | 4.680899 | 6.950643 | 7.976839 | 7.973221 |