Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01771 ATGGCGACCCACCTTCAAATTTCCGCTAAAATGGCCCTTCACGCCCCTGTTCTTCTAGCGCCCAGACTTCGATCACCGGAATGCAGCCACGTAGTGAGTTTAAAACCACATAAAAGAATTCAGAATGCTAGATCTATGGTCTCTTGTGCAATGAATATGAGTGCAGGACAATCAGATGATCCAGGGAGGGCGAGTTGGGATAGTTTGAAGAACAGGGTAAAAAAACTTTGGGACAACTCACCAGAGCCAGTGAAGTGCTTCCCTTGGAATGAAGCATTGAATAACTTCATCCAGCTTATTGCTGATCTCATCTTGTCGGTCATCAAATACTTGAGCGTACCATTGCTTGTCGTCACATCTCTCAGCGAGATGTCCTACTGCGCCCATGAAAAGAAGCTTCTTATTGTCCCATTTCCATTAATAATTGGCTTCTCTGTTGCTGAGGTCATGAGACAGACAGCTTTGAGTCTATCTCCAATTCTTAAGGATCTAGAAGTACCATGGCATTTAATCACAATTGCTCTGTTCTTCACACTCATTAAACTGCCTGGCCCATACTACCCATATTGGGGACGCATATTCCTTCCTCATTTTGCAAATGGGGGTCTGTTGAGAACAGTATGGTCTATGTTTTTCTGGTTTAGAAGACCTCGAAGGACATCGATGTTGCTGAAGCAGAAAGAGAATCACCTGGATACACCGAAGAACTAA 711 44.02 MATHLQISAKMALHAPVLLAPRLRSPECSHVVSLKPHKRIQNARSMVSCAMNMSAGQSDDPGRASWDSLKNRVKKLWDNSPEPVKCFPWNEALNNFIQLIADLILSVIKYLSVPLLVVTSLSEMSYCAHEKKLLIVPFPLIIGFSVAEVMRQTALSLSPILKDLEVPWHLITIALFFTLIKLPGPYYPYWGRIFLPHFANGGLLRTVWSMFFWFRRPRRTSMLLKQKENHLDTPKN 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11845780 11849181 - CmaCh11G017710.1 Cma11g01771 304280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01771 236 PANTHER DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED 14 222 - -
Cma11g01771 236 PANTHER DEFECTIVE 1273 PROTEIN, PUTATIVE-RELATED 14 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01771 - - - csv:101221519 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00319 Cma-Chr9:1309870 Cma11g01771 Cma-Chr11:11845780 5.73E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g471 . . . . . . . . . Cmo11g01339 . . . . Sed05g2583 Cpe04g00261 Cpe15g00507 Bhi05g01156 Tan02g0877 Cmetu01g1190 . Hepe02g0563 . . Cla02g00574 Cam02g0605 Cec02g0605 Cco02g0620 Clacu02g0601 Cmu02g0599 Cre02g0929 Cone12ag1116 Cone8ag1157 . . . Csa07g00787 . Cme01g00023 . . . Bda14g00525 Bpe15g00888 . Bma03g00527 . . . . Cma11g01771 . Car11g01078 . . . . . . . . . . . . . . . . . Lsi11g01032 . Chy01g00029 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009607 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01771 Cma_Chr11 FPKM 6.053663 5.276673 8.372851 7.888983 31.609182 30.297432 31.464632 12.300738 14.916336 13.449728