Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01774 ATGGCAGCTAGGAGCACGGAGAATACAATGCAAAAGCTTTTGCTACCGTTTTTGGTTCTCATTCTGGTTTCGTTCTCCTCTCCAACGTGGAGTTCTGATCAATCTGAATCGACCTATTCGCACTTTGTGCTCGTTCATGGCGCATGTCTTGGCGCTTGGTCATGGTACAAGGTCATTACCCTCTTGCAAACGGCTGGTCATAAAGTGACTGCACTCGACATGGCCGCTGCTGGGATCAACCAGACGCAGCCCGAGTCGTTGGCATCGCTTACCGAGTACTTCGAGCCATTGTTGAGCTTCATGGAAGCGTTGCCTTCAGATGAACGGATTGTTCTGGTCGGCCACAGCCTCGGCGGGCTCGGTATCTCCATGGCCATGGAGAGGTTCCCTGAGAAAGTCTCTGTTGCCATTTTTGTGACTGCAGCCATGCCTGGTCCCATCGTGGGGTCTTTTACCATTGAGAAACTGATGAAAATACTTCAAATGCTAAGAGCCTTCTACTCTGAAGAGGATTCCAAAGCTTCTAATTCGAACCTATTCCTATTCTCTCAAGAAGAATTGGAAGCCAAGCTTTTCCCTCTCTCGCCACCTGAGGATCTGACATTGGCAACAACACTGGTGAGGCCCCAAGCGATGTTCGGCATTTTGGAGTCGATGAAGGAGCTGAGGCTGACAAGAGACAAATACGGGTCGGTGAAAAGGGCTTTCATCATATCAGAAAAGGACGAGATGACATCCATGATCATGGTGTGGGCAATGCTCACATTCAACAAGCCAGACCGTCAGGCCGTGGTTAAGGGTTCAGATCACATGGTCATGGCTTCCAAGCCCCTTCAACTTGCCCAACAACTCACCACCATCGCTCAAGACTTCGCTTCTTCTTCCACATATGATATGTAA 900 49.44 MAARSTENTMQKLLLPFLVLILVSFSSPTWSSDQSESTYSHFVLVHGACLGAWSWYKVITLLQTAGHKVTALDMAAAGINQTQPESLASLTEYFEPLLSFMEALPSDERIVLVGHSLGGLGISMAMERFPEKVSVAIFVTAAMPGPIVGSFTIEKLMKILQMLRAFYSEEDSKASNSNLFLFSQEELEAKLFPLSPPEDLTLATTLVRPQAMFGILESMKELRLTRDKYGSVKRAFIISEKDEMTSMIMVWAMLTFNKPDRQAVVKGSDHMVMASKPLQLAQQLTTIAQDFASSSTYDM 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11857451 11859430 - CmaCh11G017740.1 Cma11g01774 304283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01774 299 Pfam Alpha/beta hydrolase family 42 282 IPR000073 -
Cma11g01774 299 PANTHER ESTERASE PIR7A-RELATED 26 290 - -
Cma11g01774 299 PANTHER METHYLESTERASE FAMILY MEMBER 26 290 IPR045889 -
Cma11g01774 299 Gene3D alpha/beta hydrolase 38 292 IPR029058 -
Cma11g01774 299 SUPERFAMILY alpha/beta-Hydrolases 39 286 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01774 - - - cmo:103495205 390.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00433 Cma-Chr2:2189995 Cma11g01774 Cma-Chr11:11857451 7.91E-78 dispersed
Cma03g00999 Cma-Chr3:7026612 Cma11g01774 Cma-Chr11:11857451 1.28E-42 dispersed
Cma11g01774 Cma-Chr11:11857451 Cma13g00508 Cma-Chr13:5394638 3.46E-47 dispersed
Cma11g01774 Cma-Chr11:11857451 Cma07g00726 Cma-Chr7:3203425 2.51E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g475 . . . . . . . . . . . . . . Sed08g2645 . . Bhi05g01157 Tan02g0874 Cmetu01g0432 . . . . . . . . . . . . Cone8ag1158 . . . Csa07g00789 . . . . . . . . . . . . . Cma11g01774 . . . . . . . . . . . . Cla09g01724 Cam09g1820 Cec09g1880 Cco09g1973 . . . . Csa02g01207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01774 Cma_Chr11 FPKM 1.561741 1.511878 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0