Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01775 ATGGGAGAGGCCTTGGCCTTTGATGCTTCCTTTATCCAACCCATTGAGCACCGTCCGAAGCTCGAACACGTCGACCCCATCGACGAAGTTCCCACCATTGATCTCTCCATCTCCGACTCTCGTAGCGTAGAACAACTTGTTTCTGACATAGCCTCTGCCTGCGAGAACTGGGGTTTCTTCCAGGTCATCAACCATGGAGTTCCCATGGAGTTGCTCGCGAGAATGGAGAAAGTAGCGAAGTTGTTTTTTGACCAGGGAATAGAGGAGAAGAGGAAGGTGAAGAGAGATGCAGCCAACGCTATGGGGTACCATGACGGTGAGAATACGAAAAACGTTAGGGATTGGAAGGAGGTGTTTGATTTCTTGGTTAGGGATCGGACGTTGGTTCCGGCTTCGCACGAGCCCGATGGCACGAGTTTGAGGGTATTGACTAATCAGTGGCCACAATATCCCCCTGAATTTAGGGAAACATGTGAGGAGTATGCAAAGGAGTTGGAATTGTTAGCTTATAAGCTACTGGGGCTGATTTGTTTGAGTCTTGGATTGCCCATTGCGGATAGATTGAAGGGTTATTTCCAAGATGAGCAAATGAGCATGGTGAGATTGAATCGCTATCCTCCATGCTCATCTCCAGATCTTGTGCTTGGCGTTGGGCGTCACAAGGATGCTGGTGCCTTGACTATCCTTGCCCAAGATGGTGTTGGAGGGCTGCAAGTGAGGAGAAAATCAGATGGAGAATGGATTCCTGTCAAACCAATCTCAAATGCATATATTGTTAACATTGGTGACATTGTTCAAGTTTGGAGCAATGACAAATACGAAAGTGTGGAGCACAGGGTTGTGGTGAATACAGAGAAGGAAAGGTTTTCGATTCCATTCTTCTTCTTTCCAGCGCACCATACAATGGTGAAGCCATTGGAGGAGGTTGTGAATGAACAAAATCCCCCAAAATACAGAGAATACAACTTTGGGAAGTTCTTTGCGTCCAGAAACCGCAGTGATTTCCAGAAGCAAAAAGTGGAAAACGTCCAAATTGACCATTTTAGGCTGCCTGTGTGA 1059 46.84 MGEALAFDASFIQPIEHRPKLEHVDPIDEVPTIDLSISDSRSVEQLVSDIASACENWGFFQVINHGVPMELLARMEKVAKLFFDQGIEEKRKVKRDAANAMGYHDGENTKNVRDWKEVFDFLVRDRTLVPASHEPDGTSLRVLTNQWPQYPPEFRETCEEYAKELELLAYKLLGLICLSLGLPIADRLKGYFQDEQMSMVRLNRYPPCSSPDLVLGVGRHKDAGALTILAQDGVGGLQVRRKSDGEWIPVKPISNAYIVNIGDIVQVWSNDKYESVEHRVVVNTEKERFSIPFFFFPAHHTMVKPLEEVVNEQNPPKYREYNFGKFFASRNRSDFQKQKVENVQIDHFRLPV 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11868700 11871080 - CmaCh11G017750.1 Cma11g01775 304284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01775 352 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 7 342 - -
Cma11g01775 352 Gene3D - 3 337 IPR027443 -
Cma11g01775 352 PANTHER DIRIGENT PROTEIN 7 342 - -
Cma11g01775 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 297 IPR005123 -
Cma11g01775 352 Pfam 2OG-Fe(II) oxygenase superfamily 198 297 IPR044861 -
Cma11g01775 352 SUPERFAMILY Clavaminate synthase-like 10 335 - -
Cma11g01775 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 30 149 IPR026992 -
Cma11g01775 352 PRINTS Isopenicillin N synthase signature 50 67 - -
Cma11g01775 352 PRINTS Isopenicillin N synthase signature 220 241 - -
Cma11g01775 352 PRINTS Isopenicillin N synthase signature 285 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01775 - - - csv:101209915 543.117
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01775 Cma19g00626 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00779 Cma-Chr1:4207787 Cma11g01775 Cma-Chr11:11868700 8.69E-47 dispersed
Cma11g01775 Cma-Chr11:11868700 Cma19g00627 Cma-Chr19:6761115 7.77E-76 dispersed
Cma13g00718 Cma-Chr13:6423868 Cma11g01775 Cma-Chr11:11868700 4.29E-51 dispersed
Cma13g01123 Cma-Chr13:8358162 Cma11g01775 Cma-Chr11:11868700 1.86E-39 dispersed
Cma02g00487 Cma-Chr2:2573922 Cma11g01775 Cma-Chr11:11868700 1.28E-39 transposed
Cma11g01775 Cma-Chr11:11868700 Cma19g00626 Cma-Chr19:6758376 7.49E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g477 . . . . . . . . Cmo19g00644 . . . . . . . Cpe15g00508 Bhi05g01158 . . . Hepe06g0397 . . . . . . . . . . . . . . Csa07g00790 . . . . . Bda14g00528 . . . . . . . Cma11g01775 Cma19g00626 . Car19g00478 . . . . . . . . . . . . . . . . Lsi11g01036 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01775 Cma_Chr11 FPKM 6.604061 7.407469 16.644835 15.460914 13.208926 14.38124 12.807718 23.354031 23.457188 25.261129