Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01777 ATGAAGGCTATGGAGACCGTCCAGGATCTGATCGAGGAGTTTAAACTTCGAACGGTTTGGTGGACTCTGTGTATTTTCTCGATTTCGTATTTTTTGACGCATACTAGTAAGTCAATGTGGTTGAATGCACCTCTAGCAATTCTATTAGTTTCTGCATTACGCATTTTGTTCAATGAGGTAGAGTTCCGTAGAAAGGTGCGACCTGTTCAGCAACAGACGTACCTATCTCATCTGGAGAAGAAGCAGTTATCTGTAAATGACTTGCGACTTTCTTCGGCCATTCCGCCACCAAGATGGAAAAGGAAACTTGACTCTCCAATTGTGGAGGCTGCAATGAAGGATTTCATTGATAAAATACTGAAGGATTTTGTGGTTGATTTATGGTATTCAGAAATAACCCCAGACAAAGAGTTTCCTGAGCAGATACACGCTCTAATCATGGATGCCCTTGGAGAGATAGCAGTTAGGGTGAAGAAGATAAACCTTGTTGACTTGCTCACGAGGGATGTTGTTGATTTAGTAGGTGATCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATTGGCATTGATGTTATGGGAACACTATCTTCCAAGGAGAGAGATGAAAGATTGAAACACCATCTTATGGCTTCTAAGGAGCTTCATCCGGCTCTGCTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTACGATCCATCGCTCGAGAACTTTTAACATGCTTGGTGATGCAACCTCTTATGAACTTTGCAAGTCCTGGGCACATAAATGAAGTGATCGAATGTATTGTCCTTGCTACTAAAGCTGAGAATGACTCTGTGATAGGCAGTCAGCAACCAACTTATTCTTCAGATCAAGACAAAGACCATTCTTCTACTGCTGGGTTCGTACATGACGAAGATTTGGATAAATCGAAACACTCATCTTTAAATCAAGGGAATGGCTCAGAGCTTGCTAAAATTGACAATCAACAAGAAAGATCCTCAGGTTACATGTTCCAGGAGGAGCCTTTGCAACTGAGACATGGTGATTGGGGCCGTGCATTAAATGCAGCAACCCAGAGGAGGACTGAAGTTCTTATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGAAACTACAGAAAAAAAGAAAATAAGATCATTAAAGTAGGAGATTTTGACCCTATGGTTACAAAAAAAGATTCTGGAATAAGTAGCATGCAGCTCGCAACAACAATGAGGGATGAAATGTTGAATGATAAGCATCATGCTTCTATTGGGCCAGAAGAAATGGCGATAGTAAGGAAAACACTGGAAAGACATTCTGATCTAATTTTGGCCTCCAAACCAGGTGATGAGAACAAAATTGGCTTTCAGATTTCTCGGGATTTTCAGAAGGATTTGACTATTGATGGGAAGTTTATTGCTAATAAATTAAGGGGTGTTGATAATCTTACTCCTGCTAGTGCAACCAAAAGTCAGCTCAAGAGATCCAATAGTACTTCTGCTTTGGAAACTGAAGTCAGTGTAGAAAAGACTTCTACAGTAGAAGTAGAAGGTGGAAGATCTATTATATCAGATTTCTCTGGTCCCAATTTTGGCAAGCATAGTGAAGAGCACCTTTCTAAGAGTGTCTCAGATATGGTAGCTCAAAAAGGACTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGCGCCTACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATACAAATAAAAGAACTTGGTTTGTCAAGAGAAGATACCGAAATTTTGAGCGTTTACATCGGCATCTTAAAGATATTCCCAACTATACACTGCACCTGCCCCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAGCGTTGCATTCAACTTGATAAATATTTGCAGGAGCTACTATCAATTGCAAATCTTGCCGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCTTTTGGAAAATCTTCCTCAGTGATGAGAACACTAGCAGTCAATGTGGATGATGCTATGGATGACATTGTACGCCAGTTTAAAGGTGTTTCAGATGGTTTCATGCGTAAGGTTGTTGGTTCAACGTCACCTTCTGATGAAGCTTGTGCCTTGTCAAACTATGAACAGAAGTTCTCATTTAATTCAGCAGACTTGCGGAAGCATGTTTCTGCACAATATAATTTAGAAGTAGCTAACAACATTTCTGACGAGGAAAGTGAGAGAATTGGAAGTCAAAATCATGATGTAAGTGGATGGCATTCAGACAATGAATTAAACTCCAAGAGCTTTCCACCTCGTGTGATCAAACGTGGTCGAGAGTTGGATAAAGTTGTTGACAAGAAAAATGATTTAGAATTGAGGTCTGGAGCCAGCCTTGGAGGATTGTCTCCAACTTTACATAATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTTAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGTTAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCCATTGATGATTGGATTGTCAGGCAAATACACTGGCTACGGAGGGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAACATTCTTTATACAATTAAGGAATGCTCAAAGTGAAGATGATTCTGAATCTATTACTAGCCGAACTGATGGAAGTAAGATCCCCAAGCCTGGATCTTTTGAGCTTCAGCTTGAGGCTGCTCGCAGAGCTAGTGATGTCAAGAAAATGCTTTTAGGTGGGGCTCCAACACCCTTGGTAAGCTTGATAGGGCACAAGCAGTACAAAAGATGCGCAAAAGATATTTATTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGACTACTCGAACTATTACTCGTATCAATTTTCCCCGAGCTGCAGAGTTTAGTTCTGGAGGTTCACGGTAAGTCGGACATCTCACAAGCAGTTAAAGTTAGTGGTACAGCAGGTGATGGACAATCTTTGGCTTCAATGGCCACCGCCTCCGCTACCCTCTACCCTGCCATGTCCACCGCCGCCCCGCTCGGCGCCCCCTCGAGGCGGCAGAGGAACACCACTGTCCATTACATTTCTGGTCTTAACTCCTTTGGTGGGTTGAAAGCTCACAACAAAATCTTCTCGTTGGGCGTTCCCGTTTGTGCTGATCAGTCATTTGCAAACATTGTGGGATCCCTGAAACGCCCATTGAAGGGAAAGGGAAAGGGCAGAAGCGGCGGTGGGGCTCTGGCTTCCACTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCCGCCATCATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTGGGGTTTGTTCTTCTCCGGGTTGAGGCTTTCGTGGAGGAGTCTGAGTGA 3546 42.72 MKAMETVQDLIEEFKLRTVWWTLCIFSISYFLTHTSKSMWLNAPLAILLVSALRILFNEVEFRRKVRPVQQQTYLSHLEKKQLSVNDLRLSSAIPPPRWKRKLDSPIVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPEQIHALIMDALGEIAVRVKKINLVDLLTRDVVDLVGDHLDLFRRNQAAIGIDVMGTLSSKERDERLKHHLMASKELHPALLSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVMQPLMNFASPGHINEVIECIVLATKAENDSVIGSQQPTYSSDQDKDHSSTAGFVHDEDLDKSKHSSLNQGNGSELAKIDNQQERSSGYMFQEEPLQLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYRKKENKIIKVGDFDPMVTKKDSGISSMQLATTMRDEMLNDKHHASIGPEEMAIVRKTLERHSDLILASKPGDENKIGFQISRDFQKDLTIDGKFIANKLRGVDNLTPASATKSQLKRSNSTSALETEVSVEKTSTVEVEGGRSIISDFSGPNFGKHSEEHLSKSVSDMVAQKGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDTNKRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANLAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAMDDIVRQFKGVSDGFMRKVVGSTSPSDEACALSNYEQKFSFNSADLRKHVSAQYNLEVANNISDEESERIGSQNHDVSGWHSDNELNSKSFPPRVIKRGRELDKVVDKKNDLELRSGASLGGLSPTLHNMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWLRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGTFFIQLRNAQSEDDSESITSRTDGSKIPKPGSFELQLEAARRASDVKKMLLGGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSIFPELQSLVLEVHGKSDISQAVKVSGTAGDGQSLASMATASATLYPAMSTAAPLGAPSRRQRNTTVHYISGLNSFGGLKAHNKIFSLGVPVCADQSFANIVGSLKRPLKGKGKGRSGGGALASTCNAAGEIFRIAAIINGLVLVGVAVGFVLLRVEAFVEESE 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11883242 11896920 + CmaCh11G017770.1 Cma11g01777 304286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01777 1181 MobiDBLite consensus disorder prediction 768 794 - -
Cma11g01777 1181 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 4 1038 - -
Cma11g01777 1181 MobiDBLite consensus disorder prediction 776 792 - -
Cma11g01777 1181 SUPERFAMILY PX domain 581 683 IPR036871 GO:0035091
Cma11g01777 1181 PANTHER PX SERINE/THREONINE KINASE PXK 4 1038 - -
Cma11g01777 1181 Pfam PetM family of cytochrome b6f complex subunit 7 1147 1174 IPR012595 GO:0009512
Cma11g01777 1181 MobiDBLite consensus disorder prediction 296 343 - -
Cma11g01777 1181 Pfam PX domain 602 679 IPR001683 GO:0035091
Cma11g01777 1181 MobiDBLite consensus disorder prediction 328 343 - -
Cma11g01777 1181 Pfam Sorting nexin C terminal 867 1001 IPR013937 -
Cma11g01777 1181 MobiDBLite consensus disorder prediction 296 310 - -
Cma11g01777 1181 Gene3D - 575 689 IPR036871 GO:0035091
Cma11g01777 1181 SUPERFAMILY PetM subunit of the cytochrome b6f complex 1146 1178 - -
Cma11g01777 1181 Hamap Cytochrome b6-f complex subunit 7 [petM]. 1145 1178 IPR012595 GO:0009512
Cma11g01777 1181 ProSiteProfiles PX domain profile. 572 684 IPR001683 GO:0035091
Cma11g01777 1181 MobiDBLite consensus disorder prediction 311 327 - -
Cma11g01777 1181 MobiDBLite consensus disorder prediction 820 842 - -
Cma11g01777 1181 CDD PX_SNX19_like_plant 574 678 - -
Cma11g01777 1181 SMART PXA_3 105 290 IPR003114 -
Cma11g01777 1181 SMART PX_2 572 680 IPR001683 GO:0035091
Cma11g01777 1181 ProSiteProfiles PXA domain profile. 105 288 IPR003114 -
Cma11g01777 1181 Pfam PXA domain 105 281 IPR003114 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01777 K17925 SNX13; sorting nexin-13 - csv:101222929 1709.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01777 Cma19g00630 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00697 Cma-Chr8:4277263 Cma11g01777 Cma-Chr11:11883242 5.56E-64 dispersed
Cma19g00632 Cma-Chr19:6784625 Cma11g01777 Cma-Chr11:11883242 7.33E-59 transposed
Cma11g01777 Cma-Chr11:11883242 Cma19g00630 Cma-Chr19:6773296 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01777 Cma_Chr11 FPKM 6.951207 7.894696 5.312215 6.566862 34.945862 26.966286 32.695858 4.443301 3.861748 4.508396