Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01780 ATGAGAGGCGCACAAGGCGGAGGAGCTATGGTGATGGAGCGGCCCAGCAGATTAAATCGAAGGCGATTTGGAGCGTACTTGCAGTCCGATCCGGCGATTTTTACCGGTAGCGATTACGAGTTCTCTTCACGGCATAGCAGTGCGGTGAGTCCGATGTATAACTACCACAAATCGCCGGCGAGTAGTGACGCTTCGCCGTCCTTGATGTCGCCGTGGAATCAATCGGGTTCTCCGTATTCGAAATCGCCCTGGATTGTTACGTCGAGGATGAATTTGTATGATGATGAATTTTACGCTCGGAATGGATTGATTGGATCTCTGGTTAGAGAGGAAGGTCATGTGTATTCGTTGGCTGTGGCAGGGGATTTGTTGTACACTGGATCGGATAGCAAGAACATTCGCGTGTGGAAGAATTTGAAGGAGTATACAGGATTTAAATCGAGTAGTGGATTAGTGAAATCGATAATCTTCTGCGCAGACAGGATTTTCACCGGACATCAAGACGGAAAAATTCGAATCTGGAAAGTCTCGTCCAAGAATCCGAAATCTCATAGCCGAATTGGAAGCCTACCGACATTGAAGGAATTCGTGAAGAGCTCGATGAATCCGAGAAATTACGTGAAAGTTCGGCGCCATCACAACGTCCTTCGTATTAGGCATTTCGACGCCATTTCATCGATGAGCTTGAACGAAGAGTTAGGGCTTTTGTACTCTGGATCTTGGGACAAAACGATGAAGGTCTGGCGAATCTCGAATTCTAAATGCCTTGAATCAATTAGCGCTCACGATGACGCCGTGAACGCCGTCGCATCGGGATTGGAAAGCCTCGTTTTCACTGGATCTGCCGATGGAACAGTGAAGGTGTGGCGAAGGGAGATGCAGGGGAAAGGTACGAAGCATTTTCTGGTTCATGTGTTGCTGAAACAGGAAAATGCGGTGACGGCCTTGGCGGTGAATCGGCATTCGGCGGTGTTGTACAGCGGTTCGTCGGATGGAGTGGTGAATTACTGGGAGAGTGAGAAGCAGTTGTCGCACGGCGGCATCCTCCGCGGCCATAAACTGGCGGTGCTCTGTTTAGCGACGGCCGGAAACATGATGTTCAGCGGATCCGCAGATAAAAACATTTGCGTTTGGCGGAGGGAAGAGAATAGCGGATCTCATACATGCTTGTCGATTCTGACCGGCCACGCAGGTCCAGTCAAATGCTTAGCGGTTAAGGAAGATAAAGAAGAATCGCCATCGTTGCCGGAGGAAACCGCAGTCAGAAAGCTGTATAACAGTAGCCGACGGTGGATTGTATACAGTGGAAGCCTGGACCGGTCGGTGAAGGTGTGGCGAGTGGCGGAGAACGCGCCAGAGCTGTTCAAGCTCCGGGAGGCGGAGCGGCCGTACAAGTAG 1398 50.64 MRGAQGGGAMVMERPSRLNRRRFGAYLQSDPAIFTGSDYEFSSRHSSAVSPMYNYHKSPASSDASPSLMSPWNQSGSPYSKSPWIVTSRMNLYDDEFYARNGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEYTGFKSSSGLVKSIIFCADRIFTGHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPRNYVKVRRHHNVLRIRHFDAISSMSLNEELGLLYSGSWDKTMKVWRISNSKCLESISAHDDAVNAVASGLESLVFTGSADGTVKVWRREMQGKGTKHFLVHVLLKQENAVTALAVNRHSAVLYSGSSDGVVNYWESEKQLSHGGILRGHKLAVLCLATAGNMMFSGSADKNICVWRREENSGSHTCLSILTGHAGPVKCLAVKEDKEESPSLPEETAVRKLYNSSRRWIVYSGSLDRSVKVWRVAENAPELFKLREAERPYK 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11907978 11909375 - CmaCh11G017800.1 Cma11g01780 304289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 289 IPR001680 GO:0005515
Cma11g01780 465 Pfam WD domain, G-beta repeat 388 445 IPR001680 GO:0005515
Cma11g01780 465 Pfam WD domain, G-beta repeat 254 289 IPR001680 GO:0005515
Cma11g01780 465 Pfam WD domain, G-beta repeat 304 337 IPR001680 GO:0005515
Cma11g01780 465 Pfam WD domain, G-beta repeat 347 378 IPR001680 GO:0005515
Cma11g01780 465 Pfam WD domain, G-beta repeat 136 175 IPR001680 GO:0005515
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Cma11g01780 465 Gene3D - 87 209 IPR015943 GO:0005515
Cma11g01780 465 Gene3D - 301 463 IPR015943 GO:0005515
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 388 IPR001680 GO:0005515
Cma11g01780 465 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 460 IPR045182 -
Cma11g01780 465 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Cma11g01780 465 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Cma11g01780 465 PRINTS G protein beta WD-40 repeat signature 433 447 IPR020472 -
Cma11g01780 465 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 11 460 - -
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 289 - -
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 338 IPR001680 GO:0005515
Cma11g01780 465 SUPERFAMILY WD40 repeat-like 105 451 IPR036322 GO:0005515
Cma11g01780 465 CDD WD40 111 446 - -
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 184 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 299 338 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 252 290 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 100 137 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 138 175 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 386 446 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 342 379 IPR001680 GO:0005515
Cma11g01780 465 SMART WD40_4 211 249 IPR001680 GO:0005515
Cma11g01780 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 254 - -
Cma11g01780 465 Gene3D - 210 300 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01780 - - - csv:101202896 785.408
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01780 Cma19g00639 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01780 Cma-Chr11:11907978 Cma20g01140 Cma-Chr20:9035443 7.08E-176 dispersed
Cma14g01104 Cma-Chr14:8097054 Cma11g01780 Cma-Chr11:11907978 6.46E-07 transposed
Cma11g01780 Cma-Chr11:11907978 Cma19g00639 Cma-Chr19:6798534 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01780 Cma_Chr11 FPKM 0.184549 0.0 1.846583 1.653695 1.019636 1.361534 1.635159 0.496534 0.141944 0.289023