Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01793 ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGTCATATTCGGGGGAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTACGGTGAGCTACCTGAGAATACACGTCTTAACGAGGGTATTGTTGGGGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGACGAAGATATTGATAGGATCTAG 438 44.06 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11997480 11997917 - CmaCh11G017930.1 Cma11g01793 304302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01793 145 MobiDBLite consensus disorder prediction 1 25 - -
Cma11g01793 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Cma11g01793 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Cma11g01793 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Cma11g01793 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cma11g01793 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Cma11g01793 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Cma11g01793 145 Gene3D - 2 145 IPR012340 -
Cma11g01793 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cma11g01793 145 SUPERFAMILY Nucleic acid-binding proteins 2 143 IPR012340 -
Cma11g01793 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Cma11g01793 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01652 Cma-Chr6:10242422 Cma11g01793 Cma-Chr11:11997480 1.28E-34 dispersed
Cma06g01656 Cma-Chr6:10253566 Cma11g01793 Cma-Chr11:11997480 2.14E-33 dispersed
Cma11g01793 Cma-Chr11:11997480 Cma14g01472 Cma-Chr14:11209627 3.17E-89 dispersed
Cma11g01793 Cma-Chr11:11997480 Cma20g00565 Cma-Chr20:2727793 2.81E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01793 K03236 - csv:101207840 274.248