Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01793 | ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGTCATATTCGGGGGAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGACGTGATTCTCAAATACATGCCTGATGAAGCTAGGCTTTTGAAAGCTTACGGTGAGCTACCTGAGAATACACGTCTTAACGAGGGTATTGTTGGGGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGACGAAGATATTGATAGGATCTAG | 438 | 44.06 | MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDRI | 145 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11997480 | 11997917 | - | CmaCh11G017930.1 | Cma11g01793 | 304302 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01793 | 145 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma11g01793 | 145 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 41 | 63 | IPR018104 | GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | CDD | S1_IF1A | 33 | 109 | IPR001253 | GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE | 1 | 145 | - | - | |
Cma11g01793 | 145 | Pfam | Translation initiation factor 1A / IF-1 | 32 | 93 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | SMART | eIF1neu4 | 28 | 110 | IPR001253 | GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | Hamap | Translation initiation factor 1A [eif1a]. | 16 | 110 | IPR001253 | GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | Gene3D | - | 2 | 145 | IPR012340 | - | |
Cma11g01793 | 145 | ProSiteProfiles | S1 domain IF1 type profile. | 22 | 96 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | SUPERFAMILY | Nucleic acid-binding proteins | 2 | 143 | IPR012340 | - | |
Cma11g01793 | 145 | PANTHER | EIF-1A | 1 | 145 | IPR001253 | GO:0003743|GO:0006413 | |
Cma11g01793 | 145 | TIGRFAM | eIF-1A: translation initiation factor eIF-1A | 14 | 110 | IPR001253 | GO:0003743|GO:0006413 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01652 | Cma-Chr6:10242422 | Cma11g01793 | Cma-Chr11:11997480 | 1.28E-34 | dispersed | |
Cma06g01656 | Cma-Chr6:10253566 | Cma11g01793 | Cma-Chr11:11997480 | 2.14E-33 | dispersed | |
Cma11g01793 | Cma-Chr11:11997480 | Cma14g01472 | Cma-Chr14:11209627 | 3.17E-89 | dispersed | |
Cma11g01793 | Cma-Chr11:11997480 | Cma20g00565 | Cma-Chr20:2727793 | 2.81E-89 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01793 | K03236 | - | csv:101207840 | 274.248 |