Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01798 ATGGCTTCTGTTCTCTTCCCTCTTCTTCGTCTTTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTGATATTCTCGCTGAATCAAGAAGGACTGTATCTTCAGCAAGTCAAACTCAGTCTCTCCGATCCTACTCAGTCCCTATCTTCATGGAACCCTCGCGACGATACTCCCTGCAACTGGTCCGGTGTCATCTGCGATTCCGTCTCTCGTTCTGTCGTCGCCGTCGACCTATCTGATTTCCAGCTCGCTGGACCTTTTCCGACCTTCTTTTGTCGACTTCCTTCTCTTTCTTCACTCTCTCTTTTCAATAATGCCATTAACGCTTCTCTTCCTGACGATCTTGCCTCCTGTTCTGGTCTCCAGCGGCTTAACTTGTCGCAGAATTTTCTCGCTGGTTCTATTCCCGATGCGGTTTCCAAGATCACGAACCTTAGGTTACTGGATCTCTCTGGAAATAACTTCTCCGGGGAGATTCCGGCGAGTTTCGGTGAGTTTCGCTGGCTTGAGACGCTGAATTTGGTTGAAAATCTTTTGAATGGAACTATTCCGGGGAGTTTGGGTAATATTTCGAGTTTGAAAGAGCTTCAACTTGCGTATAATCCGTTTTCGCGGAGTGAGATTCCGAGTGCATTTGGGAACTTGACGAAGTTGGAGGTTCTTTGGCTTGCTAACTGTAATCTTGTCGATCGGATTCCGGATATTTTTGGCGGGATGACTCGGCTTAAGAATCTGGACTTGTCGAACAATAGACTCAGTGGGTCGATTCCGGTGTCAATCACTCATTTGAAAAGCTTAGTTCAAATTGAACTGTTTAACAACTCGCTCTCCGGCGAGTTTCCTTTGGGAATGTCGAATCTAACAGCACTGCGACGAATTGATGTGTCGATGAATCACTTAACTGGAACAATTCCGGATGATCTTTGTGCATTACAGCTTGAGTCGTTAAATTTGTTCGAGAATCGATTGGAAGGGCCATTGCCGGAGAGTATCGTCAGGTCCCCATATTTGAATGAGCTCAAATTGTTTAATAACAAGCTTAGCGGACAGTTACCCAGTAAACTCGGGCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGCCATCCCGGAAAACTTGTGTGCAAAAGGGGCATTGGAAGAGCTTATATTGATTTACAACTCGTTTTCCGGGAAAATCCCTCAGAGTCTTGGAAAATGCACGAGCTTAATCCGTGTTCGAATGAGGAACAACAAACTCTCGGGTACAGTTCCAGATGATTTTTGGGGTTTGCACAACGTGTATTTACTTGAGCTCGTTGAAAATTCGCTCTCTGGGTCTATTTCTTCGAAGATATCTAGCGCCAAGAATCTCTCCATTTTGATGATCTCAGAAAATCAATTTTCAGGGTCAATTCCGGAGGAGATTGGTTCGTTAAGCAATCTGACTGAACTTTCAGGTAGTGAGAATATGTTTTCCGGTAAAATTCCGGGAAATTTAGTGAAGTTAAGCCAGTTGGGTAAACTCGATCTAAGCGATAACAAACTTTCTGGTGAATTACCAAAGGGAATTGGAGCTCTGAAGAGGCTAAACGAGCTAAATTTGGCAAACAACAGGCTATCTGGGAATATCCCGAGTGAAATTGGAAGCCTACCTGTTCTTAATTATCTCGATCTTGCTAGTAACCATCTCAGTGGTAGCATACCTCTTGAATTGCAGAATTTGAAACTGAATTCGTTAAATCTGTCGAACAATCTCTTATCAGGAGCACTTCCTCCTCTTTATGCCGAGCAAATTTTCAGAGATAGCTTTCTGGGTAATCCAGGTTTATGTAAGAACACCCCAAGTCTTTGTCCTCGCATTGAGAAAGGCAAAAACCAAGGCTATTGGCTTCTCAAAGCCATTTTTCTACTCGCTGTTGTTGTTTTTGTTGTTGGGGTCATTTGGTTCTTCTTTAAGTACAAGAAATTCAAGCAGAACAAGAATGGAATTGCGGTTTCCAAGTGGAGATCATTCCATAAACTTGGTTTCAGTGAATATGAAATCGCAGTCTCTCTCAGTGAAGACAAAGTGATCGGAAGTGGAGCATCCGGCAAAGTGTACAAAGTTGTGCTGAAAAACGGTGAGATCGTGGCCGTGAAGAAGCTATGGCAAGGAGCAAGGAAAGAGGACACCAGTTTGGATTCAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACATTGGGGAAGATTCGCCATAAGAACATTGTTAGGCTATGGTGCTGCTGCAACACTAGCAACTGCAAGCTACTTGTTTACGAGTACATGCCTAATGGGAGCTTGGGAGATTTGCTGCACGGCAGCAGAAAGAGGTTTTTGGATTGGCCGACAAGGTATAAAGTAGCTTTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCACGATTGTGCTCCTCCAATTGTTCATAGAGATATCAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCAGACTTTGGATTAGCTAAGTTCTTGAATTCTGGCAAGGATTCAGAGCCAATGTCTGTCATTGCTGGTTCTTGTGGGTATATTGCACCAGAATATGCTTATACATTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGAATGGTGATTTTAGAGCTGGTGACAGGGAGGCCTCCAAATGATCCAGAATTTGGAGATAAAAACTTGGCAAACTGGGTGTACACCACCGTCGACTGCAGAGGACTCGACCAAGCGATCGATCCGAAACTCGGTTCAAAATACAAGGAAGAAATCTACCGAGTCCTCAACGTGGGACTTCTCTGCACAAGCTCACTCCCCATCAACCGTCCTTCAATGAGACGAGTCGTCAAGCTGCTGCAAGAGCCTGCAACAGAATCCAGACCCGCCATTGCTAGTAAGGAAACCAAACTCTCTCCACATTTTTCCTACAGGGTACATTTGGATCAAGTTACTAGCAGCAGAGTCTTGATGATCACCACCATTTTCAAGGCTGCAACAACTAGGAATGGAATTTGA 3039 43.9 MASVLFPLLRLFRLLLLLLLLLPLIFSLNQEGLYLQQVKLSLSDPTQSLSSWNPRDDTPCNWSGVICDSVSRSVVAVDLSDFQLAGPFPTFFCRLPSLSSLSLFNNAINASLPDDLASCSGLQRLNLSQNFLAGSIPDAVSKITNLRLLDLSGNNFSGEIPASFGEFRWLETLNLVENLLNGTIPGSLGNISSLKELQLAYNPFSRSEIPSAFGNLTKLEVLWLANCNLVDRIPDIFGGMTRLKNLDLSNNRLSGSIPVSITHLKSLVQIELFNNSLSGEFPLGMSNLTALRRIDVSMNHLTGTIPDDLCALQLESLNLFENRLEGPLPESIVRSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGAIPENLCAKGALEELILIYNSFSGKIPQSLGKCTSLIRVRMRNNKLSGTVPDDFWGLHNVYLLELVENSLSGSISSKISSAKNLSILMISENQFSGSIPEEIGSLSNLTELSGSENMFSGKIPGNLVKLSQLGKLDLSDNKLSGELPKGIGALKRLNELNLANNRLSGNIPSEIGSLPVLNYLDLASNHLSGSIPLELQNLKLNSLNLSNNLLSGALPPLYAEQIFRDSFLGNPGLCKNTPSLCPRIEKGKNQGYWLLKAIFLLAVVVFVVGVIWFFFKYKKFKQNKNGIAVSKWRSFHKLGFSEYEIAVSLSEDKVIGSGASGKVYKVVLKNGEIVAVKKLWQGARKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTSNCKLLVYEYMPNGSLGDLLHGSRKRFLDWPTRYKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNSGKDSEPMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGMVILELVTGRPPNDPEFGDKNLANWVYTTVDCRGLDQAIDPKLGSKYKEEIYRVLNVGLLCTSSLPINRPSMRRVVKLLQEPATESRPAIASKETKLSPHFSYRVHLDQVTSSRVLMITTIFKAATTRNGI 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12031664 12037395 + CmaCh11G017980.1 Cma11g01798 304307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01798 1012 PRINTS Leucine-rich repeat signature 243 256 - -
Cma11g01798 1012 PRINTS Leucine-rich repeat signature 503 516 - -
Cma11g01798 1012 Gene3D Ribonuclease Inhibitor 286 621 IPR032675 -
Cma11g01798 1012 Gene3D Transferase(Phosphotransferase) domain 1 769 981 - -
Cma11g01798 1012 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Cma11g01798 1012 ProSiteProfiles Protein kinase domain profile. 686 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01798 1012 SUPERFAMILY L domain-like 310 611 - -
Cma11g01798 1012 Gene3D Phosphorylase Kinase; domain 1 667 768 - -
Cma11g01798 1012 Pfam Protein kinase domain 688 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01798 1012 SUPERFAMILY Protein kinase-like (PK-like) 686 960 IPR011009 -
Cma11g01798 1012 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 987 - -
Cma11g01798 1012 SUPERFAMILY L domain-like 37 377 - -
Cma11g01798 1012 SMART LRR_typ_2 527 551 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 240 264 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 143 167 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 503 526 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 191 215 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 288 312 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 216 239 IPR003591 -
Cma11g01798 1012 SMART LRR_typ_2 95 119 IPR003591 -
Cma11g01798 1012 ProSiteProfiles Leucine-rich repeat profile. 242 265 IPR001611 GO:0005515
Cma11g01798 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Cma11g01798 1012 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 12 987 - -
Cma11g01798 1012 Gene3D Ribonuclease Inhibitor 183 285 IPR032675 -
Cma11g01798 1012 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Cma11g01798 1012 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Cma11g01798 1012 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Cma11g01798 1012 SMART serkin_6 686 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01798 1012 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01291 Cma-Chr3:8390120 Cma11g01798 Cma-Chr11:12031664 0 dispersed
Cma04g00851 Cma-Chr4:4368041 Cma11g01798 Cma-Chr11:12031664 0 dispersed
Cma11g01798 Cma-Chr11:12031664 Cma18g00392 Cma-Chr18:2147366 0 dispersed
Cma11g01798 Cma-Chr11:12031664 Cma13g00622 Cma-Chr13:5990548 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68926 PF00069 Pkinase 2.50E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01798 - - csv:101208240 1583.93