Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01799 | ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGATCCGAAGGCGGAAGTTGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGTTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGAAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACCATGAACACAGCTGACAACAGCTACCATTTCCTAAGACCCAACACAAATCCTCACCAATACTTTCCCTCCTCCACCTTTTTCAGACAAGATCATGAAACTTCTCAAATATTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCCTTCCCCTTTTGGATGCCAAATTCTTCCCCCCAAGACAATAATTTCCATCACCCACTTGCACCACCACCGCCGCCGCCGCCGCCACCACCACCAACAGCAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCAGCAGCAGCAGCAGCCAACATGTCAGCCACTGTTCTGCTGCAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATGAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGTGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAATGAATGGATGGATGTGA | 1317 | 46.01 | MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPDPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAAASTMNTADNSYHFLRPNTNPHQYFPSSTFFRQDHETSQIFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPPPPPPPPPTATTSCLLSVPSLYSHEEQANQAMASSSAAAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSAITDGKALFSGLYGSMNSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAMNGWM | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12037177 | 12039907 | - | CmaCh11G017990.1 | Cma11g01799 | 304308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01799 | 438 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cma11g01799 | 438 | Gene3D | Classic Zinc Finger | 93 | 183 | - | - | |
Cma11g01799 | 438 | MobiDBLite | consensus disorder prediction | 261 | 283 | - | - | |
Cma11g01799 | 438 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 430 | - | - | |
Cma11g01799 | 438 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cma11g01799 | 438 | MobiDBLite | consensus disorder prediction | 265 | 283 | - | - | |
Cma11g01799 | 438 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cma11g01799 | 438 | SMART | c2h2final6 | 135 | 155 | IPR013087 | - | |
Cma11g01799 | 438 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Cma11g01799 | 438 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 155 | IPR036236 | - | |
Cma11g01799 | 438 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 270 | 280 | - | - | |
Cma11g01799 | 438 | PANTHER | ZINC FINGER PROTEIN MAGPIE | 22 | 430 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01799 | Cma20g00577 | CCT | |
Cma02g00198 | Cma11g01799 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01799 | Cma-Chr11:12037177 | Cma06g00370 | Cma-Chr6:1719002 | 7.56E-107 | dispersed | |
Cma11g01799 | Cma-Chr11:12037177 | Cma02g00198 | Cma-Chr2:891185 | 3.84E-122 | wgd | |
Cma11g01799 | Cma-Chr11:12037177 | Cma20g00577 | Cma-Chr20:2758301 | 1.33E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35919 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01799 | K25870 | - | csv:101207997 | 578.941 |