Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01799 ATGTCTGAAGAGCAAACAATTTCAAATGCTTTCATTTGCAGCTTGCCAACACTTGGATCAAACAACAACCCTCCTGTTCTTAAGAAGAAGAGGAATCTCCCCGGAAATCCAGATCCGAAGGCGGAAGTTGTGGCATTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGTGACATATGTGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGTTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAGCAACAAAGAGCCAAGAAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTGCACCACCATCCTTCAAGGGCGCTTGGAGACCTCACAGGCATTAAAAAGCACTTTTGCAGGAAGCATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGCATGGCCTTAGCAGAGGAAACAGCAAGACTAAACGCAGCAGCATCAACCATGAACACAGCTGACAACAGCTACCATTTCCTAAGACCCAACACAAATCCTCACCAATACTTTCCCTCCTCCACCTTTTTCAGACAAGATCATGAAACTTCTCAAATATTCCTCAACAACAACGTTAATTCCCTCACACCCACAATAGCCTTCCCCTTTTGGATGCCAAATTCTTCCCCCCAAGACAATAATTTCCATCACCCACTTGCACCACCACCGCCGCCGCCGCCGCCACCACCACCAACAGCAACAACAAGCTGTCTTCTTTCAGTTCCTTCCTTGTACAGCCACGAAGAACAAGCCAATCAAGCAATGGCATCATCATCAGCAGCAGCAGCAGCCAACATGTCAGCCACTGTTCTGCTGCAAAAGGCTGCTGAAATGGCAGTGACAAGCTCCACAACAACAGACCCATCATCATTAATGGCAAGTTTTGGGTTGAAATTCAGTGCCATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATGAACTCAAATTCCATTCCTAGTTGTTGCAGCCTTGAAAATGGTGGTGATCATCAAGACTCTGCTGCTAGTAACTTGATCCAAATGTACCCTGCTGCAAAGAGAATTAGACACACTGTTAGTGAAGAAAGTGTCACGGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATCCCCACCATATGCCATCATCCATCAGCAATGAATGGATGGATGTGA 1317 46.01 MSEEQTISNAFICSLPTLGSNNNPPVLKKKRNLPGNPDPKAEVVALSPKTLMATNRFLCDICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNAAASTMNTADNSYHFLRPNTNPHQYFPSSTFFRQDHETSQIFLNNNVNSLTPTIAFPFWMPNSSPQDNNFHHPLAPPPPPPPPPPPTATTSCLLSVPSLYSHEEQANQAMASSSAAAAANMSATVLLQKAAEMAVTSSTTTDPSSLMASFGLKFSAITDGKALFSGLYGSMNSNSIPSCCSLENGGDHQDSAASNLIQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGIPTICHHPSAMNGWM 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12037177 12039907 - CmaCh11G017990.1 Cma11g01799 304308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01799 438 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cma11g01799 438 Gene3D Classic Zinc Finger 93 183 - -
Cma11g01799 438 MobiDBLite consensus disorder prediction 261 283 - -
Cma11g01799 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 430 - -
Cma11g01799 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cma11g01799 438 MobiDBLite consensus disorder prediction 265 283 - -
Cma11g01799 438 SMART c2h2final6 57 79 IPR013087 -
Cma11g01799 438 SMART c2h2final6 135 155 IPR013087 -
Cma11g01799 438 Gene3D Classic Zinc Finger 53 80 - -
Cma11g01799 438 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Cma11g01799 438 SUPERFAMILY Formin homology 2 domain (FH2 domain) 270 280 - -
Cma11g01799 438 PANTHER ZINC FINGER PROTEIN MAGPIE 22 430 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01799 Cma20g00577 CCT
Cma02g00198 Cma11g01799 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01799 Cma-Chr11:12037177 Cma06g00370 Cma-Chr6:1719002 7.56E-107 dispersed
Cma11g01799 Cma-Chr11:12037177 Cma02g00198 Cma-Chr2:891185 3.84E-122 wgd
Cma11g01799 Cma-Chr11:12037177 Cma20g00577 Cma-Chr20:2758301 1.33E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35919 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01799 K25870 - csv:101207997 578.941