Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01804 ATGGCACAGTTGCCGCCGAAGATCCCAAACATGCCGCCGAATAATTGGCCGGAAACCTTTCCCCCCACCACCACACTTCCGGTCACCCACCAAAATCCTTCATGGGTTGACGAATTTCTTGATTTCTCTTCCTCCAGACGTGGCTCTCACCGGCGCTCCGTTAGCGATTCGATCACATTCCTCGAAATGCCAATGCCGGAGGATGATTGTCAAGGCTCCGACGCGGCTCCGACGACGGGATCTGGCAACGAATTTGATAGATTTGACGACGACCAATTCCTGTCGATGTTTAATGACGAAATCTCCGCCGCTGTTGCGCCGACTTTGTCGTCGTCGAACACCTCCACGCAGTCCGATCACAACAGCATTAACGACGAGAAAGACGGCCAACAAAGCCGGAACAAAAACGAATCCGACGAAGTACAGAGTCAACAGCAATCCAAAATTCAAACGCAATCCAACTCGCCGGCGCCGGCAGCCTCCGCCGATCGGATAACAGATCCAAAAAGAGTAAAAAGAATTCTTGCAAATCGGCAATCGGCGCAAAGATCACGAGTGAGGAAGCTTCAATACATATCGGAACTTGAACGAAGCGTCACGTCGTTGCAGGCGGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGATCAACAGAGATTGCTTCTCAACGTCGATAACAGCGCCTTGAAGCAAAGAATCGCCGCCCTTGCACAAGATAAGATTTTTAAAGATGCTCATCAGGAGGCTCTCAAAAGAGAGATAGAGAGACTAAGACAAGTTTATCACCAACAAAACATCAAGAACAATGACAATGCACCGCCATCGTCACCGCCTCCCACCGCCATCGCCATCGCCACTGCCACCAACGCCAAGCTTCCGAATGTAGATCAAAAGGGCCAAGTTCTTAACGTCGTCGTTTAG 924 50.87 MAQLPPKIPNMPPNNWPETFPPTTTLPVTHQNPSWVDEFLDFSSSRRGSHRRSVSDSITFLEMPMPEDDCQGSDAAPTTGSGNEFDRFDDDQFLSMFNDEISAAVAPTLSSSNTSTQSDHNSINDEKDGQQSRNKNESDEVQSQQQSKIQTQSNSPAPAASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDQQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKNNDNAPPSSPPPTAIAIATATNAKLPNVDQKGQVLNVVV 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12068222 12071135 + CmaCh11G018040.1 Cma11g01804 304313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01804 307 MobiDBLite consensus disorder prediction 121 135 - -
Cma11g01804 307 MobiDBLite consensus disorder prediction 1 30 - -
Cma11g01804 307 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g01804 307 SUPERFAMILY Leucine zipper domain 169 223 IPR046347 GO:0003700|GO:0006355
Cma11g01804 307 MobiDBLite consensus disorder prediction 107 170 - -
Cma11g01804 307 MobiDBLite consensus disorder prediction 136 160 - -
Cma11g01804 307 CDD bZIP_plant_RF2 170 220 IPR044759 GO:0003700|GO:0006355
Cma11g01804 307 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
Cma11g01804 307 Coils Coil 248 268 - -
Cma11g01804 307 PANTHER BASIC LEUCINE ZIPPER 61-LIKE 1 282 - -
Cma11g01804 307 MobiDBLite consensus disorder prediction 44 88 - -
Cma11g01804 307 PANTHER BASIC LEUCINE ZIPPER 34 1 282 - -
Cma11g01804 307 Pfam bZIP transcription factor 169 213 IPR004827 GO:0003700|GO:0006355
Cma11g01804 307 Gene3D - 168 221 - -
Cma11g01804 307 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 219 IPR004827 GO:0003700|GO:0006355
Cma11g01804 307 SMART brlzneu 165 229 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01804 Cma20g00588 CCT
Cma11g01804 Cma20g00588 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00734 Cma-Chr2:4455488 Cma11g01804 Cma-Chr11:12068222 2.17E-22 dispersed
Cma11g01804 Cma-Chr11:12068222 Cma16g00389 Cma-Chr16:1901032 6.92E-28 dispersed
Cma14g00491 Cma-Chr14:2411050 Cma11g01804 Cma-Chr11:12068222 9.84E-06 dispersed
Cma20g00337 Cma-Chr20:1651450 Cma11g01804 Cma-Chr11:12068222 1.97E-19 dispersed
Cma18g00961 Cma-Chr18:8167945 Cma11g01804 Cma-Chr11:12068222 1.26E-20 transposed
Cma11g01804 Cma-Chr11:12068222 Cma19g00903 Cma-Chr19:8200732 1.96E-146 wgd
Cma11g01804 Cma-Chr11:12068222 Cma20g00588 Cma-Chr20:2783690 3.24E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35920 PF07716 bZIP_2 2.20E-09 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01804 - - cmax:111486081 572.778