Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01804 | ATGGCACAGTTGCCGCCGAAGATCCCAAACATGCCGCCGAATAATTGGCCGGAAACCTTTCCCCCCACCACCACACTTCCGGTCACCCACCAAAATCCTTCATGGGTTGACGAATTTCTTGATTTCTCTTCCTCCAGACGTGGCTCTCACCGGCGCTCCGTTAGCGATTCGATCACATTCCTCGAAATGCCAATGCCGGAGGATGATTGTCAAGGCTCCGACGCGGCTCCGACGACGGGATCTGGCAACGAATTTGATAGATTTGACGACGACCAATTCCTGTCGATGTTTAATGACGAAATCTCCGCCGCTGTTGCGCCGACTTTGTCGTCGTCGAACACCTCCACGCAGTCCGATCACAACAGCATTAACGACGAGAAAGACGGCCAACAAAGCCGGAACAAAAACGAATCCGACGAAGTACAGAGTCAACAGCAATCCAAAATTCAAACGCAATCCAACTCGCCGGCGCCGGCAGCCTCCGCCGATCGGATAACAGATCCAAAAAGAGTAAAAAGAATTCTTGCAAATCGGCAATCGGCGCAAAGATCACGAGTGAGGAAGCTTCAATACATATCGGAACTTGAACGAAGCGTCACGTCGTTGCAGGCGGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGATCAACAGAGATTGCTTCTCAACGTCGATAACAGCGCCTTGAAGCAAAGAATCGCCGCCCTTGCACAAGATAAGATTTTTAAAGATGCTCATCAGGAGGCTCTCAAAAGAGAGATAGAGAGACTAAGACAAGTTTATCACCAACAAAACATCAAGAACAATGACAATGCACCGCCATCGTCACCGCCTCCCACCGCCATCGCCATCGCCACTGCCACCAACGCCAAGCTTCCGAATGTAGATCAAAAGGGCCAAGTTCTTAACGTCGTCGTTTAG | 924 | 50.87 | MAQLPPKIPNMPPNNWPETFPPTTTLPVTHQNPSWVDEFLDFSSSRRGSHRRSVSDSITFLEMPMPEDDCQGSDAAPTTGSGNEFDRFDDDQFLSMFNDEISAAVAPTLSSSNTSTQSDHNSINDEKDGQQSRNKNESDEVQSQQQSKIQTQSNSPAPAASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDQQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKNNDNAPPSSPPPTAIAIATATNAKLPNVDQKGQVLNVVV | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12068222 | 12071135 | + | CmaCh11G018040.1 | Cma11g01804 | 304313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01804 | 307 | MobiDBLite | consensus disorder prediction | 121 | 135 | - | - | |
Cma11g01804 | 307 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cma11g01804 | 307 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma11g01804 | 307 | SUPERFAMILY | Leucine zipper domain | 169 | 223 | IPR046347 | GO:0003700|GO:0006355 | |
Cma11g01804 | 307 | MobiDBLite | consensus disorder prediction | 107 | 170 | - | - | |
Cma11g01804 | 307 | MobiDBLite | consensus disorder prediction | 136 | 160 | - | - | |
Cma11g01804 | 307 | CDD | bZIP_plant_RF2 | 170 | 220 | IPR044759 | GO:0003700|GO:0006355 | |
Cma11g01804 | 307 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 172 | 187 | IPR004827 | GO:0003700|GO:0006355 | |
Cma11g01804 | 307 | Coils | Coil | 248 | 268 | - | - | |
Cma11g01804 | 307 | PANTHER | BASIC LEUCINE ZIPPER 61-LIKE | 1 | 282 | - | - | |
Cma11g01804 | 307 | MobiDBLite | consensus disorder prediction | 44 | 88 | - | - | |
Cma11g01804 | 307 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 282 | - | - | |
Cma11g01804 | 307 | Pfam | bZIP transcription factor | 169 | 213 | IPR004827 | GO:0003700|GO:0006355 | |
Cma11g01804 | 307 | Gene3D | - | 168 | 221 | - | - | |
Cma11g01804 | 307 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 167 | 219 | IPR004827 | GO:0003700|GO:0006355 | |
Cma11g01804 | 307 | SMART | brlzneu | 165 | 229 | IPR004827 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01804 | Cma20g00588 | CCT | |
Cma11g01804 | Cma20g00588 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00734 | Cma-Chr2:4455488 | Cma11g01804 | Cma-Chr11:12068222 | 2.17E-22 | dispersed | |
Cma11g01804 | Cma-Chr11:12068222 | Cma16g00389 | Cma-Chr16:1901032 | 6.92E-28 | dispersed | |
Cma14g00491 | Cma-Chr14:2411050 | Cma11g01804 | Cma-Chr11:12068222 | 9.84E-06 | dispersed | |
Cma20g00337 | Cma-Chr20:1651450 | Cma11g01804 | Cma-Chr11:12068222 | 1.97E-19 | dispersed | |
Cma18g00961 | Cma-Chr18:8167945 | Cma11g01804 | Cma-Chr11:12068222 | 1.26E-20 | transposed | |
Cma11g01804 | Cma-Chr11:12068222 | Cma19g00903 | Cma-Chr19:8200732 | 1.96E-146 | wgd | |
Cma11g01804 | Cma-Chr11:12068222 | Cma20g00588 | Cma-Chr20:2783690 | 3.24E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35920 | PF07716 | bZIP_2 | 2.20E-09 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01804 | - | - | cmax:111486081 | 572.778 |