Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01805 | ATGGACCGAGGCTTGATCATGTTCGATCATAACAACAACAACGACAGCGATAGCAACAACAAGAAGATGTTTCTGCCTTACAATGATCATGTTCAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCACCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTTTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGTTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTCGTTGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAGGGCCAACTTCTACGCAAGTACAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTTAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGACTGTTCTTCCACTCTCTTCTGA | 861 | 46.69 | MDRGLIMFDHNNNNDSDSNNKKMFLPYNDHVQTCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12078928 | 12082505 | + | CmaCh11G018050.1 | Cma11g01805 | 304314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01805 | 286 | ProSiteProfiles | ELK domain profile. | 168 | 188 | IPR005539 | GO:0003677 | |
Cma11g01805 | 286 | ProSiteProfiles | 'Homeobox' domain profile. | 188 | 251 | IPR001356 | GO:0003677 | |
Cma11g01805 | 286 | ProSitePatterns | 'Homeobox' domain signature. | 226 | 249 | IPR017970 | GO:0000981|GO:0006355 | |
Cma11g01805 | 286 | Pfam | KNOX1 domain | 35 | 71 | IPR005540 | GO:0003677|GO:0005634 | |
Cma11g01805 | 286 | SMART | HOX_1 | 190 | 255 | IPR001356 | GO:0003677 | |
Cma11g01805 | 286 | Pfam | ELK domain | 168 | 189 | IPR005539 | GO:0003677 | |
Cma11g01805 | 286 | SMART | KNOX2_2 | 79 | 130 | IPR005541 | GO:0003677|GO:0005634 | |
Cma11g01805 | 286 | SUPERFAMILY | Homeodomain-like | 190 | 265 | IPR009057 | - | |
Cma11g01805 | 286 | Gene3D | - | 193 | 255 | - | - | |
Cma11g01805 | 286 | CDD | homeodomain | 200 | 252 | IPR001356 | GO:0003677 | |
Cma11g01805 | 286 | Pfam | Homeobox KN domain | 208 | 247 | IPR008422 | GO:0003677|GO:0006355 | |
Cma11g01805 | 286 | Pfam | KNOX2 domain | 84 | 128 | IPR005541 | GO:0003677|GO:0005634 | |
Cma11g01805 | 286 | SMART | KNOX1_2 | 32 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
Cma11g01805 | 286 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 10 | 277 | - | - | |
Cma11g01805 | 286 | PANTHER | HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 | 10 | 277 | - | - | |
Cma11g01805 | 286 | SMART | ELK_2 | 168 | 189 | IPR005539 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01805 | Cma19g01021 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01805 | Cma-Chr11:12078928 | Cma04g01746 | Cma-Chr4:8772054 | 5.54E-75 | dispersed | |
Cma11g01805 | Cma-Chr11:12078928 | Cma03g00553 | Cma-Chr3:5146944 | 6.01E-119 | wgd | |
Cma11g01805 | Cma-Chr11:12078928 | Cma07g00329 | Cma-Chr7:1431763 | 2.76E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35921 | PF03791 | KNOX2 | 2.50E-22 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01805 | - | - | cpep:111792192 | 547.74 |