Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01805 ATGGACCGAGGCTTGATCATGTTCGATCATAACAACAACAACGACAGCGATAGCAACAACAAGAAGATGTTTCTGCCTTACAATGATCATGTTCAAACTTGTAGAGCTAAACTTATGGCTCATCCGTTGTTTCCTCGTCTATTGGCTTCCTATGTGAATTGTCAGAAGGTGGGTGCACCGCCGGATGTGGTGGCGAGGTTAGAACAGGCTTGTACGGTGGCTGCTGGGAATTGTAGGACGGTGGCACGTGGGGATGATCCGGGGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGAGTAAATATGAACAAGAGCTTACTAAGCCTTTTAAAGAAGCTATGGTTTTCTTTTCGAGGATTGAGTCTCAGCTTAAAGCCCTAGCTGCTTCCTCTTCTTCTTCGGATGGTTATGAGTTGGTCGGGCAAAACGAGTGTTCGAAGGAGATCGAGGTCGTTGATATGAACGAAAACTACATCGACCCACAAGCCGAAGAGAAGGAACTCAAGGGCCAACTTCTACGCAAGTACAGCGGATACCTCGGTAGCCTAAAGCAAGAGTTTCTTAAGAAGAAGAAGAATGGGAAGTTGCCTAAAGAAGCTCGGCAGCAGCTGCTTGACTGGTGGAGTAGACACTACAAATGGCCATATCCATCGGAGTCGCAAAAGGTGGCGTTGGCCGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAATTGGTTCATTAACCAAAGGAAGCGCCATTGGAAGCCATCGGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGATAATCTTATATGCAATCCATTCTCTATGGACTGTTCTTCCACTCTCTTCTGA 861 46.69 MDRGLIMFDHNNNNDSDSNNKKMFLPYNDHVQTCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICNPFSMDCSSTLF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12078928 12082505 + CmaCh11G018050.1 Cma11g01805 304314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01805 286 ProSiteProfiles ELK domain profile. 168 188 IPR005539 GO:0003677
Cma11g01805 286 ProSiteProfiles 'Homeobox' domain profile. 188 251 IPR001356 GO:0003677
Cma11g01805 286 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Cma11g01805 286 Pfam KNOX1 domain 35 71 IPR005540 GO:0003677|GO:0005634
Cma11g01805 286 SMART HOX_1 190 255 IPR001356 GO:0003677
Cma11g01805 286 Pfam ELK domain 168 189 IPR005539 GO:0003677
Cma11g01805 286 SMART KNOX2_2 79 130 IPR005541 GO:0003677|GO:0005634
Cma11g01805 286 SUPERFAMILY Homeodomain-like 190 265 IPR009057 -
Cma11g01805 286 Gene3D - 193 255 - -
Cma11g01805 286 CDD homeodomain 200 252 IPR001356 GO:0003677
Cma11g01805 286 Pfam Homeobox KN domain 208 247 IPR008422 GO:0003677|GO:0006355
Cma11g01805 286 Pfam KNOX2 domain 84 128 IPR005541 GO:0003677|GO:0005634
Cma11g01805 286 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Cma11g01805 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 277 - -
Cma11g01805 286 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 10 277 - -
Cma11g01805 286 SMART ELK_2 168 189 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01805 Cma19g01021 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01805 Cma-Chr11:12078928 Cma04g01746 Cma-Chr4:8772054 5.54E-75 dispersed
Cma11g01805 Cma-Chr11:12078928 Cma03g00553 Cma-Chr3:5146944 6.01E-119 wgd
Cma11g01805 Cma-Chr11:12078928 Cma07g00329 Cma-Chr7:1431763 2.76E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35921 PF03791 KNOX2 2.50E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01805 - - cpep:111792192 547.74