Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01810 ATGAACTCCCGATTTGGGTTTTTGTTATTGGTTTTGATATCTGTTCTTCTGGGTGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTGGGTTCATATTTAGTTTGGCAGGGAAGCAATTTGAGTTTGATATCCAATCTGTTCGGCGTGCAATCCCCTGATACCATTGTGAGCTACAACAGAGATAAAGTTCCCAACAAAGACACCATTACTAGCGGCGATAGGATCAACATTCCATTCTCCTGCGGCTGTATTAACGATGCTTTTCTGGGTCATACGTTCCAGTACAGGATTAGCAGTGGAGATAGCTACAATCAAATTGCGACCAAATTCTACGCGGGCTTGACTACGGTGGACATGTTACAGAGATTCAATAATTTTGATGTTAGTCGGCTTCCTGTAGGTGGAATTTTGAATGTAGTGGTGAACTGCTCTTGTGGGGATCCTGATGTTTCCAAGGATTATGGGCTGTTCATCACTTACCCAATTGGATCAAATGATAGTTGGGCTAATTTGGAACGAGATACAAAGATCAGCTCGAATTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCCTAGGAAATTTGATCTTTATTCCAGGCAGAGATCAAAGTGGCAGCTACCCACCTCTGAACATAAGCACAGGACTTGTAGGTGGAGCCATTGCTGGCTTAGTTATTGGTGTAGTTCTTGGGGTCTTACTTGTAGCAAGCGTCGTTTACATCGTCGTTCGAAGGAGGAAGTCGAAAAGTTCTACATTGCTGGTGTCCTCCCAAGATTTATCTTCTCAAGATGGGCATGGTCTCGTGATGGGAAGTTCCATGGATAAATCTACTGAATCAAATGGTCGAGGTGGTGGTATAGCTGCAGTCACAAATATTACTGTGGAAAAATCAGTGGAATTCTCATACGAAGAGCTTGCGAAGGCGACCGATAACTTTAGTTTGGCGAACAAAATCGGTGAAGGTGGTTTTGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAAAGCAGCAATAAAGAAGATGGATATGGAAGCTACAAGGGAGTTCCTCGCCGAAATTAAAGTTCTAACACGTGTTCACCACTTGAACCTGGTGCGTTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTTCATTGAGAATGGCAATTTAGGGCAACATTTACGTGGCACAAGTCGGGATCCGTTGCCCTGGCATACTAGGGTCCAAGTCGCGCTTGATTCAGCTCGAGGTCTTGAGTATATCCATGAGCACACCGTACCCGTTTATATTCATCGTGATATCAAATCAGCCAATATATTGATTGACAAGAACTTTCATGGAAAGGTTGCGGATTTCGGATTAACCAAGTTGACTGAAGTTGGTAATTCGTCTCTTCCCACTCGTCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCACAATATGGTGATGTTTCTCCAAAAATCGATGTGTACGCTTTCGGCGTTGTTCTTTACGAGCTTATTTCAGCCAAGGAAGCTGTGGTTAAGACAAACAGAGCCAGCGCAATTAACGAGTCGAAAGGCCTCGTCGCTTTGTTTGAAGATGTACTGAATCAACCCGACGCAAAGGAGAACCTTCACAAACTAGTTGATCCGAGACTCAAAGAGAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAACTTGCCAGAGCATGTACACATGAGAATCCACAGCTACGCCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCAACAGAAGATTGGGATGTTGGCTCGTTCTACGAAAACCAAGCCCTCGTCAACTTAATGTCGGGAAGGTAG 1851 44.03 MNSRFGFLLLVLISVLLGADSKCPRTCDVALGSYLVWQGSNLSLISNLFGVQSPDTIVSYNRDKVPNKDTITSGDRINIPFSCGCINDAFLGHTFQYRISSGDSYNQIATKFYAGLTTVDMLQRFNNFDVSRLPVGGILNVVVNCSCGDPDVSKDYGLFITYPIGSNDSWANLERDTKISSNLLQQYNQGVNFSLGNLIFIPGRDQSGSYPPLNISTGLVGGAIAGLVIGVVLGVLLVASVVYIVVRRRKSKSSTLLVSSQDLSSQDGHGLVMGSSMDKSTESNGRGGGIAAVTNITVEKSVEFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMEATREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEFIENGNLGQHLRGTSRDPLPWHTRVQVALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRASAINESKGLVALFEDVLNQPDAKENLHKLVDPRLKENYPLDSVFKMAQLARACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12102734 12108195 + CmaCh11G018100.1 Cma11g01810 304319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01810 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 616 IPR044812 GO:0019199|GO:0045087
Cma11g01810 616 ProSiteProfiles Protein kinase domain profile. 316 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01810 616 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Cma11g01810 616 Pfam Protein kinase domain 318 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01810 616 SMART LysM_2 96 142 IPR018392 -
Cma11g01810 616 SMART LysM_2 33 80 IPR018392 -
Cma11g01810 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Cma11g01810 616 ProSiteProfiles LysM domain profile. 32 79 IPR018392 -
Cma11g01810 616 Pfam LysM domain 97 139 IPR018392 -
Cma11g01810 616 Gene3D Transferase(Phosphotransferase) domain 1 387 607 - -
Cma11g01810 616 MobiDBLite consensus disorder prediction 264 286 - -
Cma11g01810 616 Gene3D Phosphorylase Kinase; domain 1 301 386 - -
Cma11g01810 616 SMART serkin_6 316 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01810 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 5 616 - -
Cma11g01810 616 SUPERFAMILY Protein kinase-like (PK-like) 299 588 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01752 Cma-Chr4:8816601 Cma11g01810 Cma-Chr11:12102734 2.21E-88 dispersed
Cma07g00750 Cma-Chr7:3333507 Cma11g01810 Cma-Chr11:12102734 1.59E-57 dispersed
Cma11g01810 Cma-Chr11:12102734 Cma15g00198 Cma-Chr15:963133 7.27E-74 dispersed
Cma12g00499 Cma-Chr12:2584854 Cma11g01810 Cma-Chr11:12102734 9.65E-59 dispersed
Cma15g00683 Cma-Chr15:3270430 Cma11g01810 Cma-Chr11:12102734 1.50E-07 dispersed
Cma11g01810 Cma-Chr11:12102734 Cma14g01290 Cma-Chr14:10198619 1.98E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68927 PF07714 PK_Tyr_Ser-Thr 2.20E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01810 - K13429 csv:101203576 1006.13