Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01814 ATGGAAGCCGCCGCCCCTTCTCCTCCTCCTCCTCCTCCTCCCACCGCTACCCTCCAGTTTCCGGTCAACCTCAACTCCACCCTCCACGAACCTCCTCCCTCTCCTCCCCCCTCTCCTCCTCCCTCTCCTCCTCCGCCACTGCCCTTCTTCCACTCCCACCGCGCCCTCTTCGACGAAATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTATCTCCGCCGCTGACTCCAAACTCCGTGCCTCCGACAACCTCAGTCCCACCAAGCTCGACTTTCAAGTAAATACAGGGTTGAATCTGTTGACCACCAATTACAGTAGCGATCAATCCATGGTGGACGATGGAATTTCATCGAACCCACAAGACACAAAAACAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAGTGAACACAGAGAATCAACGGTTAAAAGACACGTTAAATCAAGTCACCAGCAATTACCAATCGCTGCAGATGCAGTTCACAACGCTAATCCAAACCCAGAAGGCAGCCGCTGCCGGCGATTCAACTGACGAGAAGGCCGGCGACCAAGAAACGATCCGACACGGCGGTGGGAATAATGGTAATAATCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCTACGAATGTGGACATCGATGAGCCATCGATGTCGTCCTCGGAAGGGAGGAGTGATCGGTCGCCGGGTACCACCGGAGAAGTGGCGTCGTCAAAACGACATAGCCCAGATCAAGGTTCGAATTTGGGTTCAAACAAGGCTTCTAAATTCAGTTCTTCATCCTCGGGTAAAGACGTGGATCAAACTGAAGCTACTATGAGAAAAGCTCGAGTCTCCGTTCGAGCTAGATCGGAAGCACCCATGATCACAGACGGATGTCAATGGCGAAAATACGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACCATGGCCGCCGGTTGCCCCGTTCGAAAACAAGTACAAAGATGTGCTGAAGACAAGACAATTTTGATAACAACGTACGAAGGCAACCACAGCCATCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCCAGAATGCTTCTATCAGGATCCATGTCAAGTGCCGACGGTTTAATGAACCCAAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCGGCCTCGGCCCCATTTCCGACGGTCACATTAGACCTAACACAAACCCCGAACCCTTTATTCCAACGACCCACACCGGGTCACTTTCCAATCCCGTTCGCAGCCGGTCCGACTCAAAGCTTCCCACAAATTTTTGGACATGCCCTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCGAAGGAGATAGAAGCGCCTACGCCTCCTCCACCGTCGCAAAATCCATTGGCCGACACGTTGAGCGCGGCTAGTGCAGCGATCGCATCCGACCCGAATTTCATTGCGGCGTTGGCTTCTGCGATGACATCGTTGATCGGCGGATCGCATCATCAAAAGGAGAATGGGAATGGGAATAATAATGTTGATAATAATACAACAAGCAACTCCCAACAGTAA 1608 51.18 MEAAAPSPPPPPPPTATLQFPVNLNSTLHEPPPSPPPSPPPSPPPPLPFFHSHRALFDEMNFFAADDKSRVLISAADSKLRASDNLSPTKLDFQVNTGLNLLTTNYSSDQSMVDDGISSNPQDTKTKNERAVLQAELERVNTENQRLKDTLNQVTSNYQSLQMQFTTLIQTQKAAAAGDSTDEKAGDQETIRHGGGNNGNNLVPRQFMDLGLATNVDIDEPSMSSSEGRSDRSPGTTGEVASSKRHSPDQGSNLGSNKASKFSSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHSHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPTPGHFPIPFAAGPTQSFPQIFGHALYNQSKFSGLQMSKEIEAPTPPPPSQNPLADTLSAASAAIASDPNFIAALASAMTSLIGGSHHQKENGNGNNNVDNNTTSNSQQ 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12117559 12120379 + CmaCh11G018140.1 Cma11g01814 304323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01814 535 PANTHER OS05G0567200 PROTEIN 51 532 - -
Cma11g01814 535 MobiDBLite consensus disorder prediction 511 535 - -
Cma11g01814 535 Gene3D WRKY domain 279 356 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma11g01814 535 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 532 IPR044810 GO:0003700
Cma11g01814 535 MobiDBLite consensus disorder prediction 177 204 - -
Cma11g01814 535 MobiDBLite consensus disorder prediction 218 288 - -
Cma11g01814 535 MobiDBLite consensus disorder prediction 1 50 - -
Cma11g01814 535 MobiDBLite consensus disorder prediction 1 18 - -
Cma11g01814 535 ProSiteProfiles WRKY domain profile. 289 355 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01814 535 Coils Coil 130 164 - -
Cma11g01814 535 MobiDBLite consensus disorder prediction 28 50 - -
Cma11g01814 535 SMART WRKY_cls 294 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01814 535 MobiDBLite consensus disorder prediction 218 272 - -
Cma11g01814 535 Pfam WRKY DNA -binding domain 296 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma11g01814 535 SUPERFAMILY WRKY DNA-binding domain 287 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01814 Cma19g00912 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01814 Cma-Chr11:12117559 Cma13g00932 Cma-Chr13:7382978 2.38E-48 dispersed
Cma11g01814 Cma-Chr11:12117559 Cma19g00912 Cma-Chr19:8235872 0 wgd
Cma11g01814 Cma-Chr11:12117559 Cma03g00549 Cma-Chr3:5107884 8.87E-140 wgd
Cma11g01814 Cma-Chr11:12117559 Cma07g00324 Cma-Chr7:1412905 4.40E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35923 PF03106 WRKY 5.20E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01814 - - cmos:111437115 890.567