Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01814 | ATGGAAGCCGCCGCCCCTTCTCCTCCTCCTCCTCCTCCTCCCACCGCTACCCTCCAGTTTCCGGTCAACCTCAACTCCACCCTCCACGAACCTCCTCCCTCTCCTCCCCCCTCTCCTCCTCCCTCTCCTCCTCCGCCACTGCCCTTCTTCCACTCCCACCGCGCCCTCTTCGACGAAATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTATCTCCGCCGCTGACTCCAAACTCCGTGCCTCCGACAACCTCAGTCCCACCAAGCTCGACTTTCAAGTAAATACAGGGTTGAATCTGTTGACCACCAATTACAGTAGCGATCAATCCATGGTGGACGATGGAATTTCATCGAACCCACAAGACACAAAAACAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGAGTGAACACAGAGAATCAACGGTTAAAAGACACGTTAAATCAAGTCACCAGCAATTACCAATCGCTGCAGATGCAGTTCACAACGCTAATCCAAACCCAGAAGGCAGCCGCTGCCGGCGATTCAACTGACGAGAAGGCCGGCGACCAAGAAACGATCCGACACGGCGGTGGGAATAATGGTAATAATCTGGTGCCGAGGCAGTTTATGGATCTTGGATTGGCTACGAATGTGGACATCGATGAGCCATCGATGTCGTCCTCGGAAGGGAGGAGTGATCGGTCGCCGGGTACCACCGGAGAAGTGGCGTCGTCAAAACGACATAGCCCAGATCAAGGTTCGAATTTGGGTTCAAACAAGGCTTCTAAATTCAGTTCTTCATCCTCGGGTAAAGACGTGGATCAAACTGAAGCTACTATGAGAAAAGCTCGAGTCTCCGTTCGAGCTAGATCGGAAGCACCCATGATCACAGACGGATGTCAATGGCGAAAATACGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACCATGGCCGCCGGTTGCCCCGTTCGAAAACAAGTACAAAGATGTGCTGAAGACAAGACAATTTTGATAACAACGTACGAAGGCAACCACAGCCATCCATTGCCGCCGGCCGCCATGGCAATGGCATCAACAACATCATCAGCGGCCAGAATGCTTCTATCAGGATCCATGTCAAGTGCCGACGGTTTAATGAACCCAAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCGGCCTCGGCCCCATTTCCGACGGTCACATTAGACCTAACACAAACCCCGAACCCTTTATTCCAACGACCCACACCGGGTCACTTTCCAATCCCGTTCGCAGCCGGTCCGACTCAAAGCTTCCCACAAATTTTTGGACATGCCCTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCGAAGGAGATAGAAGCGCCTACGCCTCCTCCACCGTCGCAAAATCCATTGGCCGACACGTTGAGCGCGGCTAGTGCAGCGATCGCATCCGACCCGAATTTCATTGCGGCGTTGGCTTCTGCGATGACATCGTTGATCGGCGGATCGCATCATCAAAAGGAGAATGGGAATGGGAATAATAATGTTGATAATAATACAACAAGCAACTCCCAACAGTAA | 1608 | 51.18 | MEAAAPSPPPPPPPTATLQFPVNLNSTLHEPPPSPPPSPPPSPPPPLPFFHSHRALFDEMNFFAADDKSRVLISAADSKLRASDNLSPTKLDFQVNTGLNLLTTNYSSDQSMVDDGISSNPQDTKTKNERAVLQAELERVNTENQRLKDTLNQVTSNYQSLQMQFTTLIQTQKAAAAGDSTDEKAGDQETIRHGGGNNGNNLVPRQFMDLGLATNVDIDEPSMSSSEGRSDRSPGTTGEVASSKRHSPDQGSNLGSNKASKFSSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHSHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPTPGHFPIPFAAGPTQSFPQIFGHALYNQSKFSGLQMSKEIEAPTPPPPSQNPLADTLSAASAAIASDPNFIAALASAMTSLIGGSHHQKENGNGNNNVDNNTTSNSQQ | 535 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12117559 | 12120379 | + | CmaCh11G018140.1 | Cma11g01814 | 304323 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01814 | 535 | PANTHER | OS05G0567200 PROTEIN | 51 | 532 | - | - | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 511 | 535 | - | - | |
Cma11g01814 | 535 | Gene3D | WRKY domain | 279 | 356 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01814 | 535 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 51 | 532 | IPR044810 | GO:0003700 | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 177 | 204 | - | - | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 218 | 288 | - | - | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cma11g01814 | 535 | ProSiteProfiles | WRKY domain profile. | 289 | 355 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01814 | 535 | Coils | Coil | 130 | 164 | - | - | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 28 | 50 | - | - | |
Cma11g01814 | 535 | SMART | WRKY_cls | 294 | 354 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01814 | 535 | MobiDBLite | consensus disorder prediction | 218 | 272 | - | - | |
Cma11g01814 | 535 | Pfam | WRKY DNA -binding domain | 296 | 353 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma11g01814 | 535 | SUPERFAMILY | WRKY DNA-binding domain | 287 | 355 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01814 | Cma19g00912 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01814 | Cma-Chr11:12117559 | Cma13g00932 | Cma-Chr13:7382978 | 2.38E-48 | dispersed | |
Cma11g01814 | Cma-Chr11:12117559 | Cma19g00912 | Cma-Chr19:8235872 | 0 | wgd | |
Cma11g01814 | Cma-Chr11:12117559 | Cma03g00549 | Cma-Chr3:5107884 | 8.87E-140 | wgd | |
Cma11g01814 | Cma-Chr11:12117559 | Cma07g00324 | Cma-Chr7:1412905 | 4.40E-137 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35923 | PF03106 | WRKY | 5.20E-24 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01814 | - | - | cmos:111437115 | 890.567 |