Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01815 | ATGACCTGGACACGACTCGCCGCCGTCGGCCACGGCTCCTCCGCCACCGTCTACCTCGCCTCCGCCGCCCCTTCCGGAGACGTTTTTGCTGTCAAGTCCGCCGAGCTTCCCGAATCGGAGTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCTTTGTCCCACCCTTCCATTGTGAGCTACAGGGGATTCGATGTAACGAGAGAGAATGGGAAGCTGATGTATAATCTCTTCATGGAGTACGCCACCGGCGGCACACTCGCCGACGAAATTCTCCGGTGCGACGGCTGGATTAAAGAGACGGCGGCGGGATTCTACACGCGTCAAATTGTGAAAGGATTGGAGTATTTGCACAAAAGGGGTTTGGTGCATTGCGATATTAAAGCTAAGAATATTTTAATCGGGGAAGATGGTTTGAAGATTACGGATTTCGGATGCTCGAAATGGGTTAATGAACCGGCGGCTATCGGTGGAACGCCCATGTTCATGGCGCCGGAAGTAGCACGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGTCACTTGGGTGTACTTTAATCGAAATGGTCAATGGTGCTCCACCGTGGCCAACCGACGGCGACCCAGTTTCAGTGCTGTACCGGATAGGATATTCCGGCGAGTCGCCGGAAATTCCAAGCTTTCTATCGGAGAAAGCGAAGGATTTTCTGGGAAAATGCTTGAGAAGAAACCCAACAGAACGCTGGAGCGCGAGCCAGCTTCTTGAACATCCATTTTTAGAGGACACGAATTCTGAGTGGTTCGAGGAATCCAAGGAATTAGATTCAAATTCTCCGACAAGTATCTTGGATCAAGGCGTTTGGAATTCCCAAAGTGAGCTGAAAACAGAGGAATGGGACGACGACAGAATCAGACGGCTGTCGATGTTCCGGTGGGAAATCAAGTGGGAATCGGACGGTGAGAATTGGATGACGATCAGAGGAAGGTGCGTGGACGGTGAAGATGAGGCGGAATCCATTAGTGGGCAAACCAAAAGCTTGGAATTGTTTGATAGAACAGTTAGATTTTGA | 1047 | 50.33 | MTWTRLAAVGHGSSATVYLASAAPSGDVFAVKSAELPESEFLKTEQRILSSLSHPSIVSYRGFDVTRENGKLMYNLFMEYATGGTLADEILRCDGWIKETAAGFYTRQIVKGLEYLHKRGLVHCDIKAKNILIGEDGLKITDFGCSKWVNEPAAIGGTPMFMAPEVARGEKQGISSDIWSLGCTLIEMVNGAPPWPTDGDPVSVLYRIGYSGESPEIPSFLSEKAKDFLGKCLRRNPTERWSASQLLEHPFLEDTNSEWFEESKELDSNSPTSILDQGVWNSQSELKTEEWDDDRIRRLSMFRWEIKWESDGENWMTIRGRCVDGEDEAESISGQTKSLELFDRTVRF | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12131750 | 12132857 | + | CmaCh11G018150.1 | Cma11g01815 | 304324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01815 | 348 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524 | |
Cma11g01815 | 348 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 286 | IPR011009 | - | |
Cma11g01815 | 348 | ProSiteProfiles | Protein kinase domain profile. | 3 | 252 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01815 | 348 | SMART | serkin_6 | 3 | 252 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01815 | 348 | CDD | STKc_MAPKKK | 3 | 252 | - | - | |
Cma11g01815 | 348 | Pfam | Protein kinase domain | 5 | 252 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01815 | 348 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 121 | 133 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01815 | 348 | PANTHER | MAP KINASE KINASE KINASE | 1 | 332 | - | - | |
Cma11g01815 | 348 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 307 | - | - | |
Cma11g01815 | 348 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 332 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00175 | Cma11g01815 | CCT | |
Cma11g01815 | Cma20g00605 | CCT | |
Cma11g01815 | Cma20g00605 | ECH | |
Cma02g00175 | Cma11g01815 | ECH | |
Cma11g01815 | Cma19g00913 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma09g00962 | Cma-Chr9:4863606 | Cma11g01815 | Cma-Chr11:12131750 | 5.98E-105 | dispersed | |
Cma11g01815 | Cma-Chr11:12131750 | Cma19g00913 | Cma-Chr19:8240449 | 1.19E-178 | wgd | |
Cma11g01815 | Cma-Chr11:12131750 | Cma02g00175 | Cma-Chr2:804772 | 2.15E-127 | wgd | |
Cma11g01815 | Cma-Chr11:12131750 | Cma20g00605 | Cma-Chr20:2831848 | 2.83E-134 | wgd | |
Cma11g01815 | Cma-Chr11:12131750 | Cma03g00547 | Cma-Chr3:5098993 | 1.58E-95 | wgd | |
Cma11g01815 | Cma-Chr11:12131750 | Cma07g00322 | Cma-Chr7:1405439 | 3.56E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68928 | PF00069 | Pkinase | 1.60E-57 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01815 | K20716 | - | csv:101205351 | 494.967 |