Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01815 ATGACCTGGACACGACTCGCCGCCGTCGGCCACGGCTCCTCCGCCACCGTCTACCTCGCCTCCGCCGCCCCTTCCGGAGACGTTTTTGCTGTCAAGTCCGCCGAGCTTCCCGAATCGGAGTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCTTTGTCCCACCCTTCCATTGTGAGCTACAGGGGATTCGATGTAACGAGAGAGAATGGGAAGCTGATGTATAATCTCTTCATGGAGTACGCCACCGGCGGCACACTCGCCGACGAAATTCTCCGGTGCGACGGCTGGATTAAAGAGACGGCGGCGGGATTCTACACGCGTCAAATTGTGAAAGGATTGGAGTATTTGCACAAAAGGGGTTTGGTGCATTGCGATATTAAAGCTAAGAATATTTTAATCGGGGAAGATGGTTTGAAGATTACGGATTTCGGATGCTCGAAATGGGTTAATGAACCGGCGGCTATCGGTGGAACGCCCATGTTCATGGCGCCGGAAGTAGCACGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGTCACTTGGGTGTACTTTAATCGAAATGGTCAATGGTGCTCCACCGTGGCCAACCGACGGCGACCCAGTTTCAGTGCTGTACCGGATAGGATATTCCGGCGAGTCGCCGGAAATTCCAAGCTTTCTATCGGAGAAAGCGAAGGATTTTCTGGGAAAATGCTTGAGAAGAAACCCAACAGAACGCTGGAGCGCGAGCCAGCTTCTTGAACATCCATTTTTAGAGGACACGAATTCTGAGTGGTTCGAGGAATCCAAGGAATTAGATTCAAATTCTCCGACAAGTATCTTGGATCAAGGCGTTTGGAATTCCCAAAGTGAGCTGAAAACAGAGGAATGGGACGACGACAGAATCAGACGGCTGTCGATGTTCCGGTGGGAAATCAAGTGGGAATCGGACGGTGAGAATTGGATGACGATCAGAGGAAGGTGCGTGGACGGTGAAGATGAGGCGGAATCCATTAGTGGGCAAACCAAAAGCTTGGAATTGTTTGATAGAACAGTTAGATTTTGA 1047 50.33 MTWTRLAAVGHGSSATVYLASAAPSGDVFAVKSAELPESEFLKTEQRILSSLSHPSIVSYRGFDVTRENGKLMYNLFMEYATGGTLADEILRCDGWIKETAAGFYTRQIVKGLEYLHKRGLVHCDIKAKNILIGEDGLKITDFGCSKWVNEPAAIGGTPMFMAPEVARGEKQGISSDIWSLGCTLIEMVNGAPPWPTDGDPVSVLYRIGYSGESPEIPSFLSEKAKDFLGKCLRRNPTERWSASQLLEHPFLEDTNSEWFEESKELDSNSPTSILDQGVWNSQSELKTEEWDDDRIRRLSMFRWEIKWESDGENWMTIRGRCVDGEDEAESISGQTKSLELFDRTVRF 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12131750 12132857 + CmaCh11G018150.1 Cma11g01815 304324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01815 348 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cma11g01815 348 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Cma11g01815 348 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01815 348 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01815 348 CDD STKc_MAPKKK 3 252 - -
Cma11g01815 348 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01815 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cma11g01815 348 PANTHER MAP KINASE KINASE KINASE 1 332 - -
Cma11g01815 348 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cma11g01815 348 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 332 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00175 Cma11g01815 CCT
Cma11g01815 Cma20g00605 CCT
Cma11g01815 Cma20g00605 ECH
Cma02g00175 Cma11g01815 ECH
Cma11g01815 Cma19g00913 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00962 Cma-Chr9:4863606 Cma11g01815 Cma-Chr11:12131750 5.98E-105 dispersed
Cma11g01815 Cma-Chr11:12131750 Cma19g00913 Cma-Chr19:8240449 1.19E-178 wgd
Cma11g01815 Cma-Chr11:12131750 Cma02g00175 Cma-Chr2:804772 2.15E-127 wgd
Cma11g01815 Cma-Chr11:12131750 Cma20g00605 Cma-Chr20:2831848 2.83E-134 wgd
Cma11g01815 Cma-Chr11:12131750 Cma03g00547 Cma-Chr3:5098993 1.58E-95 wgd
Cma11g01815 Cma-Chr11:12131750 Cma07g00322 Cma-Chr7:1405439 3.56E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68928 PF00069 Pkinase 1.60E-57 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01815 K20716 - csv:101205351 494.967