Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01829 ATGGGAATATTTGCTGCTCTACCGCTGCTGCATACTTTGATATGGCTGTTTCTTAGTGGTTCGATCTGGTGCCAAAAGGCAGCTGTGGTAAATATTGGTGCGGTTTTTACTTTCAATTCGGTTATTGGTAGAGCAGCAAAGCCGGGGATGCAAGCAGCAATCGCCGACATAAATGCTGACTCCAACATCTTGAGTGGGACAAAGGTGAAGCTCCTGATGGAGGACTCTAACTGCAGCGACTTCTTGGGCTCTGTTGGGGCTTTGCATGTACTTGAGAAAGAGATTGTTGCAATCATTGGCCCACAATCCTCGGTGGTGGCTCATGTGATTTCTGAGCTTGTTAATGGTCTACAAATTCCTCAAGTATCATATGGAGCCACTGATCCAACATTATCGACTCTCCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGGCTGCCATGGCTGACTTGATTGATTACTATGGGTGGAAAGAAGTCATTGTTATATTTTTGGATGATGATTATGGGAGAAATGGGATATCTTCTTTGGGTGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATGGATTTGGCTTGCCTTCTCTGGCTAATCTTGCTAAGATCACGGAGATACTTAACCAATCTAAATTGCTCGGTCCTCGTGTTTATGTCGTTCACGTCGGCCCCGATCCTCAATTAAGAATCTTCACCATTGCCCATAAACTTGGAATGCTTTCCAGCAACTACGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCTTTTTCACCAACAGATCTTGCTTCACTTGATATACTTAATGGAGTAGTGGGGCTACGCCCTCATACTCAAGAGTCTAAAGGAAAGAAGGATTTGTTGAATCGTTTGAGCAAAATGCAGCCAAAAGGTTTGGCCAATTCTGTGTTGAATGTTTATGGACTCTATGCTTATGATTCAGTATGGGTTGTTGCCAGGGCAGTGGATAAGTTTCTCAAAGAAAATGGTAATATAACCTTTTCATCTACAGGTAAAGTATTTGGCACTAGTAAAAGTGGAATTCAACTAGGAAGGCTTAAAGTGTTTAATGGAGGAAGTGATCTTCTTAGGATTATTATGCAAACAAATTACAGTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGACAGAAATATCATCAATGGTAGCTATGATGTGATTAATATTGACCAAAAGGAAATTCGTACGGTGGGTTATTGGTTTAACTACTCAGGATTCTCGATTTCACCACCAGAAGCCTTGACATTGAAACAAAAAGATTCCCCCTTAGACCAGAAACTCGACATTGTAGTTTGGCCTGGTGGAAACTCAAAAATACCAAACGGTTGGGTGATAGCAGACGCTGGAAAGCCCCTAAGAATTGCATATCCAAGAAGAGAAAGCTTTGTTGAGTTTGTTACTCAAGTGAACAACACCAATGTGGTTCAAGGATACGTTATTGATATTTTCAAAGCAGCTCTCAAGCTTATTCCATATGAAGTTCCTTACAAATTTGTGCCGTTTGGGGATGGTCAAGTCAATCCTAGTTACGATGAACTCGTTCAATCGGTTGCAGATAATGTGTTTGATGCAGCTATTGGAGACATTGCTATTGTTACCAACCGTACAAAGGTTGTTGATTTTTCTCAACCCTATATCACTACCGGGCTTATCATAGTTGCCCCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGCAGAGATGTGGTGTGTAACAGGATTTTCTTTTGTGATTATTGGGATTGTTATTTGGATGCTTGAGCACCGAATCAACGACCATTTTCGAGGTCCTCCAAAGAGGCAGATTATCACTATGTGTCTGTTCAGCTTTTCAACTCTGTTCAAGGCTAATCAAGAAGCAACCATTAGCCCACTTTCACGAATGGTGATGTTGGTATGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACTGCAAGTTTGACATCAATACTCACAATTCAGAAACTTTGGTCGCCAATACGGGGAATTGATGACTTGGTTGCAAGTAACTTGCCAATAGGATATCAGGTAGGATCCTTTGCTTATGACTATTTGACACAGAGCCTTTTCATACCACGCTCCAGACTAGTGAAGCTTTACAACCCTGATGATTACGAGAAAGCACTGCGGCTTGGTCCAAAAGGAGGCGGTGTGGCAGCTATCATTGATGAACTGCCATATTTGGAGTTATTTCTGTCTAAGACCAAAGAATTTGGAATGATTGGACAAACTTTTACCAGAAGCGGATGGGGATTTGCTTTTCAGCGAAGATCTCGACTCGCAGTCGATATGTCAACTGCAATTTTAAGACTCTCTGAGAATGGAAAGCTTCAAGAGATACACGACACCTGGTTCTGTAAGCTGGGTTGTCCCGGGCAGCGGGGAGGAGAAGCGCAGCCAGACCAACTTCACCTAATCAGTTTCTGGGGTTTGTATTTACTTTGTGGAATCATTTCCTCTGCTGCACTTTTCATGTTTCTTCTAAGAATAATTGGTCAGTATATCCGTTATCAACGACAACACCGTCGTTCAGAGGTGGTTACACCGACCCCCATTCCGTCCAATACTGGCTGTACTCAGACCATTCAAAGTTTTATGCGGTTTATTGACGAGAAGGATGAAGCCATCAAAAACTTCTTTCGAGCAGCACATTTACGTGGTGCTCAAAGTGGGGAGCAACTCCAGAGACATTCCGGAGGGACAAAGGAGAAGGCTGATTTAGAGGTACAGCTGGGGACCTCGAGTATGAATTCAGGATAA 2823 42.26 MGIFAALPLLHTLIWLFLSGSIWCQKAAVVNIGAVFTFNSVIGRAAKPGMQAAIADINADSNILSGTKVKLLMEDSNCSDFLGSVGALHVLEKEIVAIIGPQSSVVAHVISELVNGLQIPQVSYGATDPTLSTLQLPFFLRTTLSDSYQMAAMADLIDYYGWKEVIVIFLDDDYGRNGISSLGDELQKKMCRISHGFGLPSLANLAKITEILNQSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLSSNYVWFATDWLATTLDSFSPTDLASLDILNGVVGLRPHTQESKGKKDLLNRLSKMQPKGLANSVLNVYGLYAYDSVWVVARAVDKFLKENGNITFSSTGKVFGTSKSGIQLGRLKVFNGGSDLLRIIMQTNYSGLSGRIQFGEDRNIINGSYDVINIDQKEIRTVGYWFNYSGFSISPPEALTLKQKDSPLDQKLDIVVWPGGNSKIPNGWVIADAGKPLRIAYPRRESFVEFVTQVNNTNVVQGYVIDIFKAALKLIPYEVPYKFVPFGDGQVNPSYDELVQSVADNVFDAAIGDIAIVTNRTKVVDFSQPYITTGLIIVAPVKDSKSSAWVFLKPFTAEMWCVTGFSFVIIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATISPLSRMVMLVWLFLLLVITSSYTASLTSILTIQKLWSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLYNPDDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGMIGQTFTRSGWGFAFQRRSRLAVDMSTAILRLSENGKLQEIHDTWFCKLGCPGQRGGEAQPDQLHLISFWGLYLLCGIISSAALFMFLLRIIGQYIRYQRQHRRSEVVTPTPIPSNTGCTQTIQSFMRFIDEKDEAIKNFFRAAHLRGAQSGEQLQRHSGGTKEKADLEVQLGTSSMNSG 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12217237 12222034 - CmaCh11G018290.1 Cma11g01829 304338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01829 940 Gene3D - 50 395 - -
Cma11g01829 940 PANTHER GLUTAMATE RECEPTOR 3.7 13 902 - -
Cma11g01829 940 SUPERFAMILY Periplasmic binding protein-like I 25 457 IPR028082 -
Cma11g01829 940 Gene3D - 754 813 - -
Cma11g01829 940 PIRSF IGluLR_plant 2 935 IPR017103 -
Cma11g01829 940 Gene3D - 466 576 - -
Cma11g01829 940 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Cma11g01829 940 Gene3D - 145 420 - -
Cma11g01829 940 CDD GluR_Plant 464 806 - -
Cma11g01829 940 Pfam Bacterial extracellular solute-binding proteins, family 3 483 806 IPR001638 -
Cma11g01829 940 Pfam Ligand-gated ion channel 807 838 IPR001320 GO:0015276|GO:0016020
Cma11g01829 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 902 - -
Cma11g01829 940 CDD PBP1_GABAb_receptor_plant 31 424 IPR044440 -
Cma11g01829 940 SUPERFAMILY Periplasmic binding protein-like II 443 806 - -
Cma11g01829 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Cma11g01829 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Cma11g01829 940 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Cma11g01829 940 Pfam Receptor family ligand binding region 47 404 IPR001828 -
Cma11g01829 940 Gene3D - 577 709 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00166 Cma11g01829 CCT
Cma11g01829 Cma20g00624 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00167 Cma-Chr2:772351 Cma11g01829 Cma-Chr11:12217237 0 dispersed
Cma11g01829 Cma-Chr11:12217237 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma11g01829 Cma-Chr11:12217237 Cma02g00166 Cma-Chr2:764297 0 wgd
Cma11g01829 Cma-Chr11:12217237 Cma20g00622 Cma-Chr20:2895161 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01829 K05387 - csv:101203158 1477.61