Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01832 ATGCCAGCCGGAATGATGATTCCAGCCAGAAACGCGCCGTCGATGATCGGACGAAATGGGAATGTCGGTGTTTTTGGCTCTCCAGCGAGCCTTGTTCTTGGTCAGGCAAATATGATGGAAGGGGCGCAGCTACATGCATTAGACATGCCACAAAGCGGTTTGCCAGACAGCGATTATGGGCTGATGAAAGAAGCAGAGGACTTCGACAGTGCCACTAAATCAAGCAGCGAGAACCACGAGGTTGGCTCTGGTGATGACCAAGACCACCGCCAACGCTCCAAGAAGAAGCGTTACCACCGCCACACTCAGCACCAGATTCAACAAATGGAAGCGTTCTTTAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAGCTGGGTTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACTCATCACGAGCGACATGAAAACACTCACCTCCGAACACAAAACGAAAAGCTTAGAGCCGATAATATGAGATATCGAGAAGCGCTCAATAACGCGACGTGCCCCAATTGTGGAGGTCCGACCGCCATCGGAGAAATGTCGTTTGATGAACATCATCTCAGGCTCGAAAATGCCCGCTTAAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAGTACGTAGGAAAGCCAGTTTCAAGCTTCCCTCTTCTTTCCCCATCAATTCCCACACATCCTCTAGAGCTCGGAATGGGCAGCTATGGAGCCGACATGTACGGGGCGGCGGACCTTATGAGGACGATAACCATGCCATCGGAGGCCGACAAGCCGATGATCATCGAGCTGGCGGTTGCAGCCATGGAGGAACTAATCCGAATGGCTCAAATGGGCGAGCCCTTGTGGATGACAGCCCTTGATGGCTCAACCACACTGCTTAACCCAGATGAATATGTCCGAACCTTCCCTAGAGGAATCGGACCGAAACCCGCTGGGTTTAGCACCGAAGCGTCTCGAGCCACCGCCGTCGTCATCATGAACCATATCAGCCTCGTGGAGATGCTCATGGACGTGAATCAGTGGTCGGCCGTATTCACTGGGATTGTCTCGAGGGCTACGACATTGGAGATTCTGTCCACCGGCGTTGCCGGTAACTACGACGGAGCATTACAAGTGATGGCATCAGAATTGCAAGTGCCATCGCCGCTTGTTCCGACTCGGGAGAGCTATTTTGTGAGGTACTGTAAGCAACATGGCGAGGGAACATGGGCTGTGGTGGACGTGTCGTTGGATAATTTGCGCCCTGCTCCTGCGCTTCGATGTAGAAGAAGGCCTTCCGGCTGTTTGATCCAAGAAATGCCTCATGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGAGGGATCCATAGTTTGTACAATCAACTTGTTAGATCTGGTCATGCGTTCGGGGCAAAGCGTTGGATCGCCATATTGGATCGTCAATGTGAACGTCTTGCTAGTGCCATGACAACGAGTATTCCGAACGGTGATGCGGGTGTGATAATGAATCAAGAAGGAAGAAAGAGCATGATGAAGCTAGCAGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGCGCATCGACTGCGTACACGTGGACAACACTGTCGGGAACTGGAGCCGATGATGTCAGAGTTATGACACGTAAGAGCATAGACGATCCCGGCAGACCACCTGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGTTGCCTGTTCCTCCTAAGAGAGTCTTCGACTTTCTCAGAGATGAAAATTCTCGTAACGAGTGGGATATTCTATCGAACGGTGGAGTTGTGCAAGAAATGGCCCACATCGCCAATGGCCGTGACACGGGTAACTCGGTCTCATTGCTACGAGTAAATAGTCCAAATTCAAGTCAAAGCAACATGTTGATATTACAAGAGAACATCACCGATCAAACTGCCGCATTTGTGATCTACGCTCCGGTGGACATTGTGGCCATCAACGTGGTGCTAAACGGTGGCGATCCCGATTACGTCGCCCTTCTCCCCTCTGGATTTGCCATTCTTCCCGATGGAACCGCCGCGTCCAACGACGGGGCTAACAACATCATGGAACATGGCTCGGGCGGGTCGCTCTTAACCGTTGCATTCCAGATCTTGGTCGACTCGATTCCGACAGCTAAACTATCACTTGGGTCGGTAGCAACGGTTAACAACCTCATTGCTTGTACTGTGGAGAGGATTAGAGCCTCTCTGTCGTGTGAGAATCCATGA 2283 51.29 MPAGMMIPARNAPSMIGRNGNVGVFGSPASLVLGQANMMEGAQLHALDMPQSGLPDSDYGLMKEAEDFDSATKSSSENHEVGSGDDQDHRQRSKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTHLRTQNEKLRADNMRYREALNNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSSFPLLSPSIPTHPLELGMGSYGADMYGAADLMRTITMPSEADKPMIIELAVAAMEELIRMAQMGEPLWMTALDGSTTLLNPDEYVRTFPRGIGPKPAGFSTEASRATAVVIMNHISLVEMLMDVNQWSAVFTGIVSRATTLEILSTGVAGNYDGALQVMASELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPHGYSKVTWVEHVEVDDRGIHSLYNQLVRSGHAFGAKRWIAILDRQCERLASAMTTSIPNGDAGVIMNQEGRKSMMKLAERMVMSFCGGVSASTAYTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSPNSSQSNMLILQENITDQTAAFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAASNDGANNIMEHGSGGSLLTVAFQILVDSIPTAKLSLGSVATVNNLIACTVERIRASLSCENP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12238851 12243639 + CmaCh11G018320.1 Cma11g01832 304341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01832 760 CDD homeodomain 95 153 IPR001356 GO:0003677
Cma11g01832 760 SUPERFAMILY Homeodomain-like 83 151 IPR009057 -
Cma11g01832 760 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 60 757 - -
Cma11g01832 760 Coils Coil 158 178 - -
Cma11g01832 760 Pfam START domain 279 498 IPR002913 GO:0008289
Cma11g01832 760 MobiDBLite consensus disorder prediction 67 92 - -
Cma11g01832 760 SUPERFAMILY Bet v1-like 518 752 - -
Cma11g01832 760 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Cma11g01832 760 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Cma11g01832 760 SUPERFAMILY Bet v1-like 271 500 - -
Cma11g01832 760 CDD START_ArGLABRA2_like 273 497 - -
Cma11g01832 760 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Cma11g01832 760 SMART HOX_1 93 156 IPR001356 GO:0003677
Cma11g01832 760 MobiDBLite consensus disorder prediction 67 104 - -
Cma11g01832 760 Gene3D - 321 494 IPR023393 -
Cma11g01832 760 SMART START_1 278 498 IPR002913 GO:0008289
Cma11g01832 760 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Cma11g01832 760 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 757 IPR042160 -
Cma11g01832 760 Gene3D - 81 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00163 Cma11g01832 CCT
Cma11g01832 Cma20g00628 CCT
Cma02g00163 Cma11g01832 ECH
Cma11g01832 Cma20g00628 ECH
Cma11g01832 Cma19g00929 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01144 Cma-Chr1:8366072 Cma11g01832 Cma-Chr11:12238851 1.56E-118 dispersed
Cma11g01832 Cma-Chr11:12238851 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma11g01832 Cma-Chr11:12238851 Cma13g00725 Cma-Chr13:6447191 0 wgd
Cma11g01832 Cma-Chr11:12238851 Cma19g00929 Cma-Chr19:8312158 0 wgd
Cma11g01832 Cma-Chr11:12238851 Cma02g00163 Cma-Chr2:753284 0 wgd
Cma11g01832 Cma-Chr11:12238851 Cma20g00628 Cma-Chr20:2926078 0 wgd
Cma11g01832 Cma-Chr11:12238851 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma11g01832 Cma-Chr11:12238851 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35925 PF01852 START 6.40E-56 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01832 K09338 - csv:101219415 1310.82