Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01834 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTTCAAGGATTGAAGAAGGAATTTAGTTATAACAAAATACTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGAGTCCATTTGTTATGGTTCTGGTTTGGTTATAATATATATCATCATGAACAAGAATTCTGAAGGTGTTATTAGCACTGCTACATATTGTGCAGTAATAGGATTTTGTCTCTTTTCATTGAAAAGCTGGGATTGTGAAGAAGGAAAATATAAAGATTCACGGTTTCTAAACAGCTTCAAGGTTGAGAATTCTATTACTGTTTACAGCAGCTTAACTGACAGTAGTGGACATAATATATATATGATAGAACTACGTTTAGAAGTTGCGTGCATGTTACAACTCTGGATGCTTTGGTTTGTCAGACCAAGTCATGGATCATTGTTATCATTATCATTATCATTATCATTATCATTATCA 600 37.17 MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQESICYGSGLVIIYIIMNKNSEGVISTATYCAVIGFCLFSLKSWDCEEGKYKDSRFLNSFKVENSITVYSSLTDSSGHNIYMIELRLEVACMLQLWMLWFVRPSHGSLLSLSLSLSLSLS 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12249549 12252027 - CmaCh11G018340.1 Cma11g01834 304343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01834 200 SUPERFAMILY eIF1-like 4 81 IPR036877 GO:0003743|GO:0006413
Cma11g01834 200 PANTHER BNAA09G12640D PROTEIN 4 84 - -
Cma11g01834 200 Pfam Translation initiation factor SUI1 28 82 IPR001950 GO:0003743|GO:0006413
Cma11g01834 200 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 88 IPR001950 GO:0003743|GO:0006413
Cma11g01834 200 CDD eIF1_SUI1 29 81 IPR005874 GO:0003743
Cma11g01834 200 Gene3D - 1 86 - -
Cma11g01834 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 4 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01834 Cma-Chr11:12249549 Cma19g00931 Cma-Chr19:8323374 1.34E-56 dispersed
Cma11g01834 Cma-Chr11:12249549 Cma11g01835 Cma-Chr11:12252767 2.93E-66 tandem
Cma11g01834 Cma-Chr11:12249549 Cma19g00930 Cma-Chr19:8319318 6.47E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01834 K03113 - csv:101219651 167.162