Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01837 ATGGCCATTTCTTCCAAGCTTTTTTCCCTTCTCTTTTTGCAGCTAATGTTCATCTCGTCTCTCTCGAACATTGCTGAAGCAGACGGCTTGTCGTCTAGGTTTTATCAGTACACTTGCCCCGGGTTAGAGTATACTGTCGCCAAAACGGTGGCTTTGTATATTAAGAAACAACCTACTCTAGCAGCTTCATTATTGAGGATGCACTTCCACGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTACTACTAAATTCGACACCAAACAATCAAGCCGAGAAAGATTCTATTCCTAACCTTACTTTAAGAGGTTACAATGTCGTCGATGCTGTTAAAGCGGTCGTTGAAAAGCAGTGCCCTGGTGTCGTTTCATGTGCTGACATCCTCGCTTTGGTGGCTCGTGACGCCGTTAGAATGATTGGAGGCCCATTTTGGGAAGTTCCAACAGGAAGAAGAGACGGAACTGTGTCGATCTCAAGAGAAGCCCTAATCAATTTGCCGCCTCCCTTCGCCAACATCTCATCTCTCAAAACAAGTTTCCTCTCCTTAGGTCTCTCCGTCAAAGATCTCGTCGTTTTATCCGGAGCACACACAATCGGAGTCTCGAAATGCAGTTCCTTCTCCAACCGCCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCGAAATTAGACAAATACTACGCCGTCGCATTGAAAGGTAAATGCAAGCCAAACGACCAGAAATCGATCGTCGAGATGGATCCAGGAAGCTTCAAGACCTTCGATGAAAGTTACTACACTCTCGTCTCCAAGAGAAGAGGTTTGTTCCAGTCCGATTCCGCTCTTCTCGACGATCCTGACACCAAAGCCTACGTTGTATTACAAGCACAAACACGCGGCGCTACTTTCGCCGTCGATTTCGCTGAATCGATGATCAGTATGGGACAGATCGGCGTCCTCACCGGCAACGACGGCGAAATTAGGCGCCAATGTAGTGTTGTTAACTGA 987 47.32 MAISSKLFSLLFLQLMFISSLSNIAEADGLSSRFYQYTCPGLEYTVAKTVALYIKKQPTLAASLLRMHFHDCFVRGCDGSVLLNSTPNNQAEKDSIPNLTLRGYNVVDAVKAVVEKQCPGVVSCADILALVARDAVRMIGGPFWEVPTGRRDGTVSISREALINLPPPFANISSLKTSFLSLGLSVKDLVVLSGAHTIGVSKCSSFSNRLYNFTGKGDADPKLDKYYAVALKGKCKPNDQKSIVEMDPGSFKTFDESYYTLVSKRRGLFQSDSALLDDPDTKAYVVLQAQTRGATFAVDFAESMISMGQIGVLTGNDGEIRRQCSVVN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12261525 12263604 + CmaCh11G018370.1 Cma11g01837 304346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01837 328 PANTHER PEROXIDASE 25-RELATED 10 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Cma11g01837 328 CDD secretory_peroxidase 29 327 IPR033905 GO:0004601|GO:0042744
Cma11g01837 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cma11g01837 328 Pfam Peroxidase 47 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 Gene3D Peroxidase, domain 2 166 307 - -
Cma11g01837 328 SUPERFAMILY Heme-dependent peroxidases 29 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 ProSiteProfiles Plant heme peroxidase family profile. 29 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01837 328 Gene3D - 33 328 - -
Cma11g01837 328 PANTHER PEROXIDASE 10 326 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01837 Cma20g00633 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01837 Cma-Chr11:12261525 Cma03g00990 Cma-Chr3:6983239 4.66E-92 dispersed
Cma17g01002 Cma-Chr17:7327612 Cma11g01837 Cma-Chr11:12261525 2.75E-66 dispersed
Cma19g00277 Cma-Chr19:2006785 Cma11g01837 Cma-Chr11:12261525 1.82E-76 dispersed
Cma11g01837 Cma-Chr11:12261525 Cma11g01838 Cma-Chr11:12266469 2.04E-129 tandem
Cma18g00648 Cma-Chr18:5907554 Cma11g01837 Cma-Chr11:12261525 3.38E-74 transposed
Cma19g01104 Cma-Chr19:9131066 Cma11g01837 Cma-Chr11:12261525 8.66E-73 transposed
Cma11g01837 Cma-Chr11:12261525 Cma02g00155 Cma-Chr2:726827 1.46E-120 wgd
Cma11g01837 Cma-Chr11:12261525 Cma20g00633 Cma-Chr20:2948709 2.62E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01837 K00430 - csv:101219177 539.265