Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01838 ATGGAGCTCTCTCGTGGTCTTGTCTTTCTAATGGTATGTCTTTTAGGACTTGCTAGCTCAACCCAAGCTCACCTCCAGCTCGGTTATTATGCAAAGACTTGCCCTCGTGCTGAGAAAATTATCTCCGAGTTCGTCTACAAGAGCGTTCCCAAGGTTCCCACCTTGGCTGCTGCCTTCATTCGAATGCATTTTCACGATTGCTTCGTTCGGGGTTGTGATGCATCTGTACTTTTGAACTCGACTGCTGGTAACCCGAGTGAGAAGGAATCTCCGCCGAATCTAACATTGAGAGGCTTCGATTTCCTTGATAAAATCAAGAAGCTTTTGGAAGATGAGTGCCCTGGAATCGTCTCATGTTCCGACATTCTTTCTCTGGTTACAAGAGACTCGATCGTTTCCATTGGCGGTCCATTTTGGAGGGTTCCAACAGGAAGAAGAGACGGAGTGATCTCGAGATCATCAGAAGCTTTAGTGAACATTCCACCACCGTTTGCTAACTTGTCGACTCTCGAACGACAATTCGCCAACCAAGGTCTTGATTTAAAAGACTTGGTTTTGTTATCAGGAGCTCACACCATTGGGATATCCCATTGCTCATCATTCACAAGGCGGCTATACAACTTCACAGGAGTGGGAGACCAAGACCCATCATTGGACTCCGAGTACGCCGCCAATCTAAAGGCAAAGAAATGCAAAAGCATACGTGCTAACGGCATCGTCGAAATGGACCCTGGCAGCTTCCGGACCTTCGACCTCAGCTACTACTCTCTGCTCCTCAAGCGCCGTGGGCTGTTCCAGTCCGACGCGGCGCTGACCACCAGCCCGGTCACCAAGGCCTTCGTCACGGACCTGCTCAATGGCTCGGTTAAGAATTTCTTCTCCGAATTTGGGTTAGCCATGGAGAAGATGGGTCGGATCGGGGTCAAGACCGGCGCCGAGGGGGAGATTCGCAAGCATTGTGCTCTTGTTAATGCTTGA 978 49.8 MELSRGLVFLMVCLLGLASSTQAHLQLGYYAKTCPRAEKIISEFVYKSVPKVPTLAAAFIRMHFHDCFVRGCDASVLLNSTAGNPSEKESPPNLTLRGFDFLDKIKKLLEDECPGIVSCSDILSLVTRDSIVSIGGPFWRVPTGRRDGVISRSSEALVNIPPPFANLSTLERQFANQGLDLKDLVLLSGAHTIGISHCSSFTRRLYNFTGVGDQDPSLDSEYAANLKAKKCKSIRANGIVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALTTSPVTKAFVTDLLNGSVKNFFSEFGLAMEKMGRIGVKTGAEGEIRKHCALVNA 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12266469 12267961 + CmaCh11G018380.1 Cma11g01838 304347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01838 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601|GO:0042744
Cma11g01838 325 PANTHER PEROXIDASE 25-RELATED 5 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 Pfam Peroxidase 43 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 Gene3D - 29 324 - -
Cma11g01838 325 Gene3D Peroxidase, domain 2 161 303 - -
Cma11g01838 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cma11g01838 325 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01838 325 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cma11g01838 325 PANTHER PEROXIDASE 5 324 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00155 Cma11g01838 CCT
Cma02g00155 Cma11g01838 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00155 Cma-Chr2:726827 Cma11g01838 Cma-Chr11:12266469 3.14E-171 dispersed
Cma08g01197 Cma-Chr8:7347661 Cma11g01838 Cma-Chr11:12266469 2.46E-108 dispersed
Cma11g01838 Cma-Chr11:12266469 Cma20g00633 Cma-Chr20:2948709 2.69E-174 dispersed
Cma11g01837 Cma-Chr11:12261525 Cma11g01838 Cma-Chr11:12266469 2.04E-129 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01838 K00430 - csv:101213629 468.003