Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01861 ATGAAGCTATCTCACGCGCTTCAGAGCGCGTGGCAGAGAGAAATAGAACACAGACCAAAACCAGAGAGAGAAAACGGAGCAAAGTTTAAGAGAAATTCTCACCTTCACCGTACTGTTGTGGAGGATGCTTGCGCGGATTCGGTTTTTAGAATAAGAAGAAATCGAGGTGAGTTTTGCATCAATGGGTTGGAGATCTTTGAGGAGTGCCAATTTGAGGATCTTGGCACAGGTTTTAGTCGGATTCGTGATCTGTGCAGCACAAGTTCTTCTCGGAATTACGAATCCAGGCGATTTAGCTTTCATACTGCGCTGGGGCTCCCCAATCTTCCTGGATGGGGCATTGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTTTGTAATGATTCAAATATCATTAAAATAGTTGTTAATGCTGCTAATTTGGGAGGTGAACTCGGTGATAGCTTGGGAATGTTTTCTTCGATCCAAACAATGTTTCTTTCAGCTAACGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCTTTGATTCAACTGTCCGCCATGTCGTTGAACGACAACAAATTAAGCGGAGAAATACCAGATTCCTTTCAAGCCATTACTCAATTGGTCAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAACTATCAGGGACCCTTGATGTTCTACAAGATCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAACTCTTCTGTTTCTCCGACGCTTCCTCCTTCTGTATCTCCATCACCACCGTCACCGTCAAAGCCAGCACCACCACCACCACCAGCACCGCCCGTTCCTGAAGCACGACCATCTTCTCAACAAAAACCAAAGAATCAGGCTGATGGACCATCAGCGCCTGAGGAATCGAGCACTGGAAGAAATAAGAAAAACACTAAAAGGGTTGCTTTGATAACACTTGCAGCTGTATTGTCATTCATAATCTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAACAGTTGATAGTATTTCCAAGCGACGTCATCAGATAGGTGCTTATAGGGCTGAGAGAGAGAATGCTGGCAATGACGGATCCATGCGCCCTCCGGTTGATCAGATACCTAAAGTTCCAATCGAGGCAGTAGTAAGGCCGAAGCAGGAAACTCAAATAGAAGCTCAGAAGGTCCCAAAAGCTCATGAAGAGAGAGAGACAAACGTGCCAAGAATGAGTGCTATTCCGAAGAAGGATCATCATCTAGTAGAAATGAGCGCACTTGATGTCTATCTAATGCCGCCCCCTCCCCCACCACCTCCCCCTCCACCACCACCACCTCCTATTGAAGAGGTCACTGCTGTGCCCAGTGTTCCAGCCGAAGTTCTTCCCTCTAAGCCTCCCACCAAACATAGAACTACCTCAACTTTTGCAAAATCTTTCACCATTGCATCCCTACAGCAATATACAAACAGCTTTTCACCGGAGAATCTTCTCGGAGAAGGTATGCTGGGGACTGTTTATAGGGCCCAGCTCCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAAAGAGCTTTCAATCAACAAAAAGACGACGAGTTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGCTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGATGAAGAGTTTAGGAAGAACCTTTCTTGGAACGCCCGCATTCGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGACGATGATTTTTCAGTCCATGTTTCGGATTGCGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGCTATGGGGCGCCAGAATTTGAATCGGGAGTTTATACACTCGAGAGTGATGTTTACAGCTTTGGTGTGGTTATGTTGGAACTTCTCACTGGACGGATGTCTTACGACAGAACAAGGACCCGAGGTGAGCAGTTCTTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACGAGCATGGTCGATCCTTCACTCAATGGTCAATATCCTGCCAAATCCTTGTCGTACTTTGCCGATATCATATCAAAATGTGTACAGTCGGAGCCTGAATTCCGGCCACCGATGTCGACGGTTGTTCAGGACTTGCTGAGCATGATAAGGAAAGAACCAAATGGCAGTGGTTCAAGTGAAGACGATGCGAAGATCTTCGAGCAAATCTCCGGGATCTTCTTCACAATGAGTCGATACGATTCCAATCCTTTTGACGATGACGTTAATCCATTTTCTAATTCTGGAGCTGGAGGTGTTCAACCCGCACCCTCCAGGCTCTCACCTCTTCCCCATGAAACTTACGATCGTGGTGCAACGATTGACATTCCTCTCGATACTGCAAAGGATTTGAAAGCTAAGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAATTAAAGAAGAGGGAACAGGAATTAAAACGGAGGGAAGATGCTATTGCAAGAGCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCATTTTTTCCCCTTATCCATAATGATATTGCAAATGAAATACCGATCCATCTACAGAACGTCCAGTATGTTGCCTTCACAACATTGTTGGGTTTGGTTGTGTGCCTTTCGTGGAACATTATAGCAGTTACTACTGCTTGGATCAATGGTGAAGGTCCAACAATATGGTTTCTTGCTATTATCTACCTCATATCAGGTGTACCTGGAGCATATGTCGGGTGGTATCGTCCTCTCTATCGTGCTACAAGGACTGATAGTGCTCTGAAGTTCGGGTGGTTTTTCCTAGTTTACTCGATTCATATTAGCTTCTGCGTCTTTTCTGCAGTTGCTCCTCCCATTATATTTAAGGGGAAATCTCTTACAGGGATCTTACCTGCTATAGACTTGTTGGGTACTAATGCTTTGGTTGGGATATTCTACTTCATTGGCTTTGCATTCTTCTGCATTGAATCACTAATCAGCATATGGGTTATCCAGCAAGTATACATGTACTTCCGAGGTAGCGGTATGGCTGTAGACATGAAACGTGAAGCCGCCATGGGAACCCTGAGGGCAGCTTTTTGA 3354 45.29 MKLSHALQSAWQREIEHRPKPERENGAKFKRNSHLHRTVVEDACADSVFRIRRNRGEFCINGLEIFEECQFEDLGTGFSRIRDLCSTSSSRNYESRRFSFHTALGLPNLPGWGIGQDPCGDAWQGVVCNDSNIIKIVVNAANLGGELGDSLGMFSSIQTMFLSANEFTGSIPSSLSSLIQLSAMSLNDNKLSGEIPDSFQAITQLVNLDLSNNNLSGPLPPSASNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPNFRKDGNPFNSSVSPTLPPSVSPSPPSPSKPAPPPPPAPPVPEARPSSQQKPKNQADGPSAPEESSTGRNKKNTKRVALITLAAVLSFIILVLACVLFMPRCRRRTVDSISKRRHQIGAYRAERENAGNDGSMRPPVDQIPKVPIEAVVRPKQETQIEAQKVPKAHEERETNVPRMSAIPKKDHHLVEMSALDVYLMPPPPPPPPPPPPPPPIEEVTAVPSVPAEVLPSKPPTKHRTTSTFAKSFTIASLQQYTNSFSPENLLGEGMLGTVYRAQLPSGKLLAVKKLDKRAFNQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKNLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDFSVHVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLSMIRKEPNGSGSSEDDAKIFEQISGIFFTMSRYDSNPFDDDVNPFSNSGAGGVQPAPSRLSPLPHETYDRGATIDIPLDTAKDLKAKEKELQAKEAELKKREQELKRREDAIARAGIVIEEKNWPPFFPLIHNDIANEIPIHLQNVQYVAFTTLLGLVVCLSWNIIAVTTAWINGEGPTIWFLAIIYLISGVPGAYVGWYRPLYRATRTDSALKFGWFFLVYSIHISFCVFSAVAPPIIFKGKSLTGILPAIDLLGTNALVGIFYFIGFAFFCIESLISIWVIQQVYMYFRGSGMAVDMKREAAMGTLRAAF 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12371461 12384606 - CmaCh11G018610.1 Cma11g01861 304370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01861 1117 MobiDBLite consensus disorder prediction 430 446 - -
Cma11g01861 1117 Coils Coil 886 916 - -
Cma11g01861 1117 SUPERFAMILY Protein kinase-like (PK-like) 506 804 IPR011009 -
Cma11g01861 1117 MobiDBLite consensus disorder prediction 1 27 - -
Cma11g01861 1117 MobiDBLite consensus disorder prediction 320 340 - -
Cma11g01861 1117 MobiDBLite consensus disorder prediction 281 344 - -
Cma11g01861 1117 MobiDBLite consensus disorder prediction 427 446 - -
Cma11g01861 1117 Gene3D Transferase(Phosphotransferase) domain 1 609 830 - -
Cma11g01861 1117 MobiDBLite consensus disorder prediction 11 27 - -
Cma11g01861 1117 Pfam Protein tyrosine and serine/threonine kinase 534 804 IPR001245 GO:0004672|GO:0006468
Cma11g01861 1117 Gene3D Phosphorylase Kinase; domain 1 496 607 - -
Cma11g01861 1117 Gene3D Ribonuclease Inhibitor 95 295 IPR032675 -
Cma11g01861 1117 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 157 819 - -
Cma11g01861 1117 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 99 160 - -
Cma11g01861 1117 SUPERFAMILY L domain-like 108 274 - -
Cma11g01861 1117 MobiDBLite consensus disorder prediction 291 319 - -
Cma11g01861 1117 PANTHER OS01G0253100 PROTEIN 157 819 IPR045271 GO:0004714|GO:0006468
Cma11g01861 1117 PANTHER OS01G0253100 PROTEIN 99 160 IPR045271 GO:0004714|GO:0006468
Cma11g01861 1117 SUPERFAMILY Formin homology 2 domain (FH2 domain) 474 483 - -
Cma11g01861 1117 ProSiteProfiles Protein kinase domain profile. 530 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01861 1117 Pfam SCAMP family 926 1097 IPR007273 GO:0015031|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01861 Cma19g00972 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00615 Cma-Chr6:2998499 Cma11g01861 Cma-Chr11:12371461 3.99E-101 dispersed
Cma11g01861 Cma-Chr11:12371461 Cma19g00972 Cma-Chr19:8515254 0 dispersed
Cma16g01199 Cma-Chr16:9123316 Cma11g01861 Cma-Chr11:12371461 1.94E-106 dispersed
Cma11g01861 Cma-Chr11:12371461 Cma19g00971 Cma-Chr19:8509729 3.36E-178 wgd
Cma11g01861 Cma-Chr11:12371461 Cma03g00479 Cma-Chr3:4813485 0 wgd
Cma11g01861 Cma-Chr11:12371461 Cma07g00268 Cma-Chr7:1193185 4.96E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68929 PF07714 PK_Tyr_Ser-Thr 1.50E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01861 - - csv:101213734 1097.42