Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01861 | ATGAAGCTATCTCACGCGCTTCAGAGCGCGTGGCAGAGAGAAATAGAACACAGACCAAAACCAGAGAGAGAAAACGGAGCAAAGTTTAAGAGAAATTCTCACCTTCACCGTACTGTTGTGGAGGATGCTTGCGCGGATTCGGTTTTTAGAATAAGAAGAAATCGAGGTGAGTTTTGCATCAATGGGTTGGAGATCTTTGAGGAGTGCCAATTTGAGGATCTTGGCACAGGTTTTAGTCGGATTCGTGATCTGTGCAGCACAAGTTCTTCTCGGAATTACGAATCCAGGCGATTTAGCTTTCATACTGCGCTGGGGCTCCCCAATCTTCCTGGATGGGGCATTGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTTTGTAATGATTCAAATATCATTAAAATAGTTGTTAATGCTGCTAATTTGGGAGGTGAACTCGGTGATAGCTTGGGAATGTTTTCTTCGATCCAAACAATGTTTCTTTCAGCTAACGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCTTTGATTCAACTGTCCGCCATGTCGTTGAACGACAACAAATTAAGCGGAGAAATACCAGATTCCTTTCAAGCCATTACTCAATTGGTCAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAATAATCAACTATCAGGGACCCTTGATGTTCTACAAGATCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGTTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAACTCTTCTGTTTCTCCGACGCTTCCTCCTTCTGTATCTCCATCACCACCGTCACCGTCAAAGCCAGCACCACCACCACCACCAGCACCGCCCGTTCCTGAAGCACGACCATCTTCTCAACAAAAACCAAAGAATCAGGCTGATGGACCATCAGCGCCTGAGGAATCGAGCACTGGAAGAAATAAGAAAAACACTAAAAGGGTTGCTTTGATAACACTTGCAGCTGTATTGTCATTCATAATCTTGGTTTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAACAGTTGATAGTATTTCCAAGCGACGTCATCAGATAGGTGCTTATAGGGCTGAGAGAGAGAATGCTGGCAATGACGGATCCATGCGCCCTCCGGTTGATCAGATACCTAAAGTTCCAATCGAGGCAGTAGTAAGGCCGAAGCAGGAAACTCAAATAGAAGCTCAGAAGGTCCCAAAAGCTCATGAAGAGAGAGAGACAAACGTGCCAAGAATGAGTGCTATTCCGAAGAAGGATCATCATCTAGTAGAAATGAGCGCACTTGATGTCTATCTAATGCCGCCCCCTCCCCCACCACCTCCCCCTCCACCACCACCACCTCCTATTGAAGAGGTCACTGCTGTGCCCAGTGTTCCAGCCGAAGTTCTTCCCTCTAAGCCTCCCACCAAACATAGAACTACCTCAACTTTTGCAAAATCTTTCACCATTGCATCCCTACAGCAATATACAAACAGCTTTTCACCGGAGAATCTTCTCGGAGAAGGTATGCTGGGGACTGTTTATAGGGCCCAGCTCCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAAAGAGCTTTCAATCAACAAAAAGACGACGAGTTTCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGCTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGATGAAGAGTTTAGGAAGAACCTTTCTTGGAACGCCCGCATTCGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGACGATGATTTTTCAGTCCATGTTTCGGATTGCGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGCTATGGGGCGCCAGAATTTGAATCGGGAGTTTATACACTCGAGAGTGATGTTTACAGCTTTGGTGTGGTTATGTTGGAACTTCTCACTGGACGGATGTCTTACGACAGAACAAGGACCCGAGGTGAGCAGTTCTTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACGAGCATGGTCGATCCTTCACTCAATGGTCAATATCCTGCCAAATCCTTGTCGTACTTTGCCGATATCATATCAAAATGTGTACAGTCGGAGCCTGAATTCCGGCCACCGATGTCGACGGTTGTTCAGGACTTGCTGAGCATGATAAGGAAAGAACCAAATGGCAGTGGTTCAAGTGAAGACGATGCGAAGATCTTCGAGCAAATCTCCGGGATCTTCTTCACAATGAGTCGATACGATTCCAATCCTTTTGACGATGACGTTAATCCATTTTCTAATTCTGGAGCTGGAGGTGTTCAACCCGCACCCTCCAGGCTCTCACCTCTTCCCCATGAAACTTACGATCGTGGTGCAACGATTGACATTCCTCTCGATACTGCAAAGGATTTGAAAGCTAAGGAGAAGGAGCTTCAAGCCAAAGAAGCTGAATTAAAGAAGAGGGAACAGGAATTAAAACGGAGGGAAGATGCTATTGCAAGAGCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCATTTTTTCCCCTTATCCATAATGATATTGCAAATGAAATACCGATCCATCTACAGAACGTCCAGTATGTTGCCTTCACAACATTGTTGGGTTTGGTTGTGTGCCTTTCGTGGAACATTATAGCAGTTACTACTGCTTGGATCAATGGTGAAGGTCCAACAATATGGTTTCTTGCTATTATCTACCTCATATCAGGTGTACCTGGAGCATATGTCGGGTGGTATCGTCCTCTCTATCGTGCTACAAGGACTGATAGTGCTCTGAAGTTCGGGTGGTTTTTCCTAGTTTACTCGATTCATATTAGCTTCTGCGTCTTTTCTGCAGTTGCTCCTCCCATTATATTTAAGGGGAAATCTCTTACAGGGATCTTACCTGCTATAGACTTGTTGGGTACTAATGCTTTGGTTGGGATATTCTACTTCATTGGCTTTGCATTCTTCTGCATTGAATCACTAATCAGCATATGGGTTATCCAGCAAGTATACATGTACTTCCGAGGTAGCGGTATGGCTGTAGACATGAAACGTGAAGCCGCCATGGGAACCCTGAGGGCAGCTTTTTGA | 3354 | 45.29 | MKLSHALQSAWQREIEHRPKPERENGAKFKRNSHLHRTVVEDACADSVFRIRRNRGEFCINGLEIFEECQFEDLGTGFSRIRDLCSTSSSRNYESRRFSFHTALGLPNLPGWGIGQDPCGDAWQGVVCNDSNIIKIVVNAANLGGELGDSLGMFSSIQTMFLSANEFTGSIPSSLSSLIQLSAMSLNDNKLSGEIPDSFQAITQLVNLDLSNNNLSGPLPPSASNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKLLSIPNFRKDGNPFNSSVSPTLPPSVSPSPPSPSKPAPPPPPAPPVPEARPSSQQKPKNQADGPSAPEESSTGRNKKNTKRVALITLAAVLSFIILVLACVLFMPRCRRRTVDSISKRRHQIGAYRAERENAGNDGSMRPPVDQIPKVPIEAVVRPKQETQIEAQKVPKAHEERETNVPRMSAIPKKDHHLVEMSALDVYLMPPPPPPPPPPPPPPPIEEVTAVPSVPAEVLPSKPPTKHRTTSTFAKSFTIASLQQYTNSFSPENLLGEGMLGTVYRAQLPSGKLLAVKKLDKRAFNQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKNLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDFSVHVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSTVVQDLLSMIRKEPNGSGSSEDDAKIFEQISGIFFTMSRYDSNPFDDDVNPFSNSGAGGVQPAPSRLSPLPHETYDRGATIDIPLDTAKDLKAKEKELQAKEAELKKREQELKRREDAIARAGIVIEEKNWPPFFPLIHNDIANEIPIHLQNVQYVAFTTLLGLVVCLSWNIIAVTTAWINGEGPTIWFLAIIYLISGVPGAYVGWYRPLYRATRTDSALKFGWFFLVYSIHISFCVFSAVAPPIIFKGKSLTGILPAIDLLGTNALVGIFYFIGFAFFCIESLISIWVIQQVYMYFRGSGMAVDMKREAAMGTLRAAF | 1117 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12371461 | 12384606 | - | CmaCh11G018610.1 | Cma11g01861 | 304370 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 430 | 446 | - | - | |
Cma11g01861 | 1117 | Coils | Coil | 886 | 916 | - | - | |
Cma11g01861 | 1117 | SUPERFAMILY | Protein kinase-like (PK-like) | 506 | 804 | IPR011009 | - | |
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 320 | 340 | - | - | |
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 281 | 344 | - | - | |
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 427 | 446 | - | - | |
Cma11g01861 | 1117 | Gene3D | Transferase(Phosphotransferase) domain 1 | 609 | 830 | - | - | |
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 11 | 27 | - | - | |
Cma11g01861 | 1117 | Pfam | Protein tyrosine and serine/threonine kinase | 534 | 804 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01861 | 1117 | Gene3D | Phosphorylase Kinase; domain 1 | 496 | 607 | - | - | |
Cma11g01861 | 1117 | Gene3D | Ribonuclease Inhibitor | 95 | 295 | IPR032675 | - | |
Cma11g01861 | 1117 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED | 157 | 819 | - | - | |
Cma11g01861 | 1117 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED | 99 | 160 | - | - | |
Cma11g01861 | 1117 | SUPERFAMILY | L domain-like | 108 | 274 | - | - | |
Cma11g01861 | 1117 | MobiDBLite | consensus disorder prediction | 291 | 319 | - | - | |
Cma11g01861 | 1117 | PANTHER | OS01G0253100 PROTEIN | 157 | 819 | IPR045271 | GO:0004714|GO:0006468 | |
Cma11g01861 | 1117 | PANTHER | OS01G0253100 PROTEIN | 99 | 160 | IPR045271 | GO:0004714|GO:0006468 | |
Cma11g01861 | 1117 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 474 | 483 | - | - | |
Cma11g01861 | 1117 | ProSiteProfiles | Protein kinase domain profile. | 530 | 808 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01861 | 1117 | Pfam | SCAMP family | 926 | 1097 | IPR007273 | GO:0015031|GO:0016021 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01861 | Cma19g00972 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00615 | Cma-Chr6:2998499 | Cma11g01861 | Cma-Chr11:12371461 | 3.99E-101 | dispersed | |
Cma11g01861 | Cma-Chr11:12371461 | Cma19g00972 | Cma-Chr19:8515254 | 0 | dispersed | |
Cma16g01199 | Cma-Chr16:9123316 | Cma11g01861 | Cma-Chr11:12371461 | 1.94E-106 | dispersed | |
Cma11g01861 | Cma-Chr11:12371461 | Cma19g00971 | Cma-Chr19:8509729 | 3.36E-178 | wgd | |
Cma11g01861 | Cma-Chr11:12371461 | Cma03g00479 | Cma-Chr3:4813485 | 0 | wgd | |
Cma11g01861 | Cma-Chr11:12371461 | Cma07g00268 | Cma-Chr7:1193185 | 4.96E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68929 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-41 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01861 | - | - | csv:101213734 | 1097.42 |