Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01867 ATGGGTGGTTGTGTCTCTACGAGTAGCCATAGTACTAGTAGTAGCCAGAGCAATGGGGAATCAGTGTCTTCCTCATGTTTGGGAATTGAATTTCGAGGTCGAAAACGAACGAAACGAACATTCTCCGACCATGTTTACGCTCTTCAGAAGCTCTCTTCAGCTTCCAACAGGATCTTCATGAACGGGAAGAGTCGTTGTTCGTGCATTTTCACGCAACAAGGTCGCAAGGGCATCAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACGATCTTTTGTGGCGTGTTTGATGGTCACGGACCTTACGGCCATCTCGTTGCTCGAAAAGTTAGGGATACATTGCCTATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAAGAACTCTGCTCAAACATGTTTCCAGAGGAATTTGAAGACGCCTCGAGAATGTGACGATTCTGAGAAGGATCGTTTTATCGAGGACTCACTGAATTCGGTATGGAGAGATGCGTTTTTGAACTCGTATAAAGCTATGGATAAGGAGCTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGCAGTACTGCAGTCACCATTGTTAAACAGGGGTCGAATCTGTTCATGGGGTATATCGGAGACTCTCGTGCAATACTTGCTTCAAAGGATGCCAATGACTCGACTGTGGCGGTTCAATTGACTGTCGATCTTAAGCCAGATTTGCCGAGAGAAGCTGAAAGAATCAAAAGGTGTAAAGGTAGAGTTTTTGCATTGCAAGATGAGCCTGAAGTGTCAAGGGTATGGTTACCTTTCGACGATGCGCCTGGTTTAGCTATGGCTCGAGCATTTGGCGATTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCTCATCGAATGCTCACCGACGCCGATCAGTTCATTGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGAAATAGTGTCCTTGGCCCCGACTCGCTCGTCTGCTGCGAGGTCTGTGATTGACTCTGCTGCTCGTGAATGGAAGCTCAAATACCCCACCTCGAAAATGGACGACTGTGCTGTCGTCTGCTTGTTTCTGGACGGGAAGATGGACTCTGAATCCGACTGTGAAGAACAAGGCTTCTCATCTGCAACATTGCGGAGTAATCATTCGGGTACTGCTGTCGAATCCGATGATGGCCAGAGGTCCGAGCCATGCTTGCAAAGGAACAACACCGTCAGATCATCAGAAGATGGCAGTAGTTTTGGAGGATTACCAGTCGACGACGGGGAGACCGGTGATGCTGTACCTGCAGACGATCAAAACTGGTCGGGTTTAGAAGGAGTCACTCGAGTAAACTCGCTTGTTCAACTTCCTAGATTCTCTGATGAAAGGCCAGTGTCATAG 1425 47.16 MGGCVSTSSHSTSSSQSNGESVSSSCLGIEFRGRKRTKRTFSDHVYALQKLSSASNRIFMNGKSRCSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQKNSAQTCFQRNLKTPRECDDSEKDRFIEDSLNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRMLTDADQFIVLASDGVWDVLSNEEVVEIVSLAPTRSSAARSVIDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDCEEQGFSSATLRSNHSGTAVESDDGQRSEPCLQRNNTVRSSEDGSSFGGLPVDDGETGDAVPADDQNWSGLEGVTRVNSLVQLPRFSDERPVS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12414538 12417306 - CmaCh11G018670.1 Cma11g01867 304376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01867 474 MobiDBLite consensus disorder prediction 387 453 - -
Cma11g01867 474 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Cma11g01867 474 PANTHER ALPHABET, ISOFORM E-RELATED 1 462 - -
Cma11g01867 474 SUPERFAMILY PP2C-like 58 374 IPR036457 -
Cma11g01867 474 SMART PP2C_4 50 370 IPR001932 -
Cma11g01867 474 Gene3D - 54 374 IPR036457 -
Cma11g01867 474 MobiDBLite consensus disorder prediction 387 425 - -
Cma11g01867 474 MobiDBLite consensus disorder prediction 1 23 - -
Cma11g01867 474 Pfam Protein phosphatase 2C 155 348 IPR001932 -
Cma11g01867 474 CDD PP2Cc 72 372 IPR001932 -
Cma11g01867 474 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 462 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00117 Cma11g01867 CCT
Cma11g01867 Cma19g00978 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01867 Cma-Chr11:12414538 Cma20g00555 Cma-Chr20:2692702 0 dispersed
Cma11g01867 Cma-Chr11:12414538 Cma19g00978 Cma-Chr19:8542875 0 wgd
Cma11g01867 Cma-Chr11:12414538 Cma02g00117 Cma-Chr2:588445 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01867 - - csv:101204594 853.203