Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01872 ATGCTGCTCCGCCGTGGCCATGCTACATTTTCGTCTTGTGGGTACTTATGGAGTGGGATAATGTTGGTGAATATGGTCGTGATGGGGAAGTTTCTTCTCGTTGAATCAGTTCGGCTTCAAAATCGTACGTCAGCTTCTCATTGGCTCCCCGCCACCGCCACCTGGTATGGCAGTCCCGAAGGCGATGGCAGCAACGGTGGGGCATGTGGGTATGGTAGTTTGGTGGATGTGAAGCCATTTAAGGCGAGAGTTGGTGCAGTGAGCCCTGTCTTATTCAAGGACGGTGAAGGGTGTGGCGCATGCTATAAAGTCCGTTGCTTGGACCGAACCATATGCTCCAAACGAGCCGTTACCATAATAGTCACCGACGAGTGTCCCGGTGGCTATTGCTCCAATGGTCGCACCCACTTTGATCTTAGTGGCGCCGCTTTCGGCCGCATGGCTGTCGCCGGTGCCCACAGCCGTCTTCGTGATCGAGGCGAACTCTCGGTCACCTACCGACGGACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCCATGTAAACGAAGGTTCTACCGATCATTGGCTCTCGCTTTTAGTGGAGTTCGAGGATGGTGATGGAGATATTGGTTCTATGCAAATCAAACAAGCAAAGTCGAGTGAGTGGATGGAAATGGCACACGTGTGGGGGGCGACGTGGTGCATAAATGGAGGACCTTTAGAGGGGCCATTCTCGGTGAAGCTAACCACGTTATCCACTGCCAAGACTCTCTCGACTAGAGATGTTATCCCGAAGAATTGGTCACCAAAAGCTACTTATACTTCTCGCTTGAACTTTTCATAA 828 51.57 MLLRRGHATFSSCGYLWSGIMLVNMVVMGKFLLVESVRLQNRTSASHWLPATATWYGSPEGDGSNGGACGYGSLVDVKPFKARVGAVSPVLFKDGEGCGACYKVRCLDRTICSKRAVTIIVTDECPGGYCSNGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVTYRRTPCLYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQAKSSEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSTRDVIPKNWSPKATYTSRLNFS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12428645 12430485 - CmaCh11G018720.1 Cma11g01872 304381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01872 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 270 IPR007117 -
Cma11g01872 275 Pfam Expansin C-terminal domain 178 259 IPR007117 -
Cma11g01872 275 Pfam Lytic transglycolase 86 165 IPR009009 -
Cma11g01872 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Cma11g01872 275 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576|GO:0019953
Cma11g01872 275 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Cma11g01872 275 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Cma11g01872 275 PRINTS Major pollen allergen Lol pI signature 196 211 IPR005795 GO:0005576|GO:0019953
Cma11g01872 275 PRINTS Major pollen allergen Lol pI signature 246 263 IPR005795 GO:0005576|GO:0019953
Cma11g01872 275 PANTHER EXPANSIN-B17 44 274 - -
Cma11g01872 275 SUPERFAMILY Barwin-like endoglucanases 41 175 IPR036908 -
Cma11g01872 275 SMART dpbb_1 84 166 IPR007112 -
Cma11g01872 275 Gene3D - 33 171 IPR036908 -
Cma11g01872 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 176 IPR007112 -
Cma11g01872 275 SUPERFAMILY PHL pollen allergen 176 270 IPR036749 -
Cma11g01872 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Cma11g01872 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cma11g01872 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Cma11g01872 275 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Cma11g01872 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Cma11g01872 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Cma11g01872 275 Gene3D - 173 275 IPR036749 -
Cma11g01872 275 PANTHER EXPANSIN-B3 44 274 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00104 Cma11g01872 CCT
Cma11g01872 Cma20g00193 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01872 Cma-Chr11:12428645 Cma14g02155 Cma-Chr14:14770870 5.93E-73 dispersed
Cma11g01872 Cma-Chr11:12428645 Cma02g00104 Cma-Chr2:537137 6.86E-150 wgd
Cma11g01872 Cma-Chr11:12428645 Cma20g00193 Cma-Chr20:916333 1.23E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01872 K20628 - csv:101205324 483.411