Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01878 ATGGATGAATCTCTGCTCGGTGTAGAAAGTGGCAGCAGCTCCAGCTCTCGACGTCAGATTCCTCATGTGAAGTTCAAGCGCCGCTCTGACGCCATCGCTTATGGCTCTGCGTACCAAAGAGCTGCTGCACTCGTGGATCTGGCTGAAGATGGCGTTGGTATACCTGAGAAAATCCTTGATCAATCGAACTTTCAGAGTGCTGCAAAGCTCTACTTCATTTTTATTAAATTTGATTTGATTTGGTCTGTAAATTTCTTTGCGCTGATAGTCCTAAATTTCTTTGAGAAACCCTTGTGGTGCTCCAAATACGATACGCATTCTTGTAACGACAGAGAGTATTTCTTTCTTGGGCAGTTGCCTTACTTAACAGCTGTTGAATCTCTTATATATGAGGCTGTGACTCTCATAATACTCATGATACACACTTTTTTCCCAATTTCGTTTGAAGGAGCCCAGCTTTATTGGAAAAATCCCTTGAACCAGTTGAAGGTCATATGCTTAATTATTTTGGTGGCCGATTTTCTCATTTATACCCTATATTTGTCACCAGTGGCCTTTGATTATCTTCCATTCAGAGTTGCACCGTATATTAGAGTTGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCATCATTCTAGCTGGAATGCTTGGCACATACTTGAATGTCTTGGCTCTATGGTTTTTGTTTCTTCTGTTTTCCAGCTGGTTGGCATACGTTATTTTTGAGGATACAGAGCAGGGGAAATTATTATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCTAATAATCCAAATGTTTGGATACCTGCCTACAAGGCATCTCGTTGGTATTGCCTCTTTTTTGTTCTTTACGTGCTGTTGGGAGTTTATTTCGTTACAAACTTGATTCTTGCTGTTGTATACGATAGCTTTAAGAGTCAGCTGGCTAAACAAATTTCTGAGATGGACCGCTTGAGGAAAAGTATATTGGCCAAAGCATTTAGTCTTATGGATACTGATAACGTTGGGTTTATCAATAAACAGCAGTGCCTTATACTTCTTGAAGAACTTAACAGATACAGGACTTTGCCGAAGATATCAAGGGATGATTATGAGTTAATATTTGATGAGCTGGATGACAGTCGTGATTTTAAGATCAATATGAATGAGTTTGCTGATCTTTGCAATGCTATAGCCTTGAAGTTTCAGAAGGAGGACATTCCTTCAGTGTTTGAAGCGTATCCTTTGATCTACGATTCAGTTTCTTCAAAAAAGTTGAAAGCATTTGTGCGGAGCCCCTCATTTGGATATGCTATATCCTTTATCCTCATACTGAACCTGGTTGCTGTTATTATTGAAACAACACTCGATATAGAAAACAATGTTGGACAGAAAGCATGGCAAGAACTCGAGTTTGTATTTGGTTGGATATATGTGGTTGAAATGGCTCTAAAAATCTACGCGTTTGGATTTATGAATTATTGGAGAGATGGCCAAAATCAGTTTGATTTCCTTGTCACATGGATTATAGTGATTGGAGAAACCATGACTTTTGTGGCACCTAGTGGACTAACTTTTCTTTCAAATGGAGAATGGATTCGCTACCTTCTGATAGCAAGAATGTTACGCCTGATAAGGCTCCTAATGCATGTCCGGCAATATCGAGCATTTCTTGCTACCTTTTTAACTCTCATCCCTAGCTTGATGCCATATCTAGGAACTATTTTCTGTGTCCTCTGTCTTTATTGCACTCTTGGTGTGCAGGTCTTTGGAGGACTTGTTAACGCTGGAAATCCTGCTTTGTCTAAGACTGATCTGGATGATGATGACTACCTACTTTTCAATTTCAACGACTATCCTAATGGCATGGTGACACTGTTCAATTTGCTAGTTATGGGAAACTGGCAAGACTGGATGCAGAGCTACAAGGAATTAACAGGAAGTATTTGGAGCCACGTTTATTTCATCAGTTTCTACCTAATAACAGTTTTGCTGCTCTTGAATTTGGTTGTAGCTTTTGTCTTGGAGGCTTTCTTTGCTGAATTGGATATTGAATCTTCAGAAAATGGTGAAGAACAGGATCAGGACGCAGATAGTAGAAAGGATCGTCGACGTTTCGTCGGCACAAAAACTAGGAGCCGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAATTGGATGGAAAGGATTCCGATTAG 2217 39.6 MDESLLGVESGSSSSSRRQIPHVKFKRRSDAIAYGSAYQRAAALVDLAEDGVGIPEKILDQSNFQSAAKLYFIFIKFDLIWSVNFFALIVLNFFEKPLWCSKYDTHSCNDREYFFLGQLPYLTAVESLIYEAVTLIILMIHTFFPISFEGAQLYWKNPLNQLKVICLIILVADFLIYTLYLSPVAFDYLPFRVAPYIRVVFFIMNIRHLRESIIILAGMLGTYLNVLALWFLFLLFSSWLAYVIFEDTEQGKLLFTSFGATLYQMFILFTTSNNPNVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQISEMDRLRKSILAKAFSLMDTDNVGFINKQQCLILLEELNRYRTLPKISRDDYELIFDELDDSRDFKINMNEFADLCNAIALKFQKEDIPSVFEAYPLIYDSVSSKKLKAFVRSPSFGYAISFILILNLVAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMALKIYAFGFMNYWRDGQNQFDFLVTWIIVIGETMTFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMHVRQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCTLGVQVFGGLVNAGNPALSKTDLDDDDYLLFNFNDYPNGMVTLFNLLVMGNWQDWMQSYKELTGSIWSHVYFISFYLITVLLLLNLVVAFVLEAFFAELDIESSENGEEQDQDADSRKDRRRFVGTKTRSRKVDILLHHMLSAELDGKDSD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12454312 12468530 + CmaCh11G018780.1 Cma11g01878 304387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01878 738 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 735 IPR044581 GO:0005245
Cma11g01878 738 Gene3D - 562 721 - -
Cma11g01878 738 SUPERFAMILY EF-hand 325 418 IPR011992 -
Cma11g01878 738 Gene3D - 317 400 - -
Cma11g01878 738 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g01878 738 CDD EFh 334 398 IPR002048 GO:0005509
Cma11g01878 738 Gene3D - 208 316 - -
Cma11g01878 738 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Cma11g01878 738 SUPERFAMILY Voltage-gated potassium channels 436 682 - -
Cma11g01878 738 Gene3D - 428 561 IPR027359 -
Cma11g01878 738 SMART efh_1 374 402 IPR002048 GO:0005509
Cma11g01878 738 SMART efh_1 333 361 IPR002048 GO:0005509
Cma11g01878 738 Pfam Ion transport protein 437 682 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma11g01878 738 Pfam Ion transport protein 134 318 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01878 Cma19g00987 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01878 Cma-Chr11:12454312 Cma19g00987 Cma-Chr19:8582629 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01878 K16900 - csv:101206980 1308.51