Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01881 ATGTCTTCTTCTTCAATCACTCTGTTCTGCGCCGTAATTTCGATTCTAATCTCCATGTCCATGTCAGTCTCCGCTACAGAGTTCATCTTCAACACGAATTTCACTTCCACTAATACTCTGCTCTTCGGCAACGCTACCGTTGATTCATCTGTTCTTATTCTCACAAGGGATTCAACTTTCACCATCGGCCGTGCTCTATACCCTTCCAAAATCCCGGTCCGTTTCTCCGATTCTTCTTTTTCCTTTGCAACTTCCTTCATCTTCTCCGTCACTCCACAGCCAAATCACCTCCCCGGCCATGGATTCGCCTTTCTCTTCACACCTTCTACTGGAATCAATGGCACGAGCTCGGCTCAGAATTTGGGGCTTTTCAATTTCACCACTAATGGTAACCCTAATAACCATGTCTTCGCTGTTGAGTTCGATTCCTTCCAAAATCAAGAGTTCAACGACTCGAATGATAACCATGTGGGTGTAGATTTGAATTCTCTTGAGTCTACTGCCTCATCTACAGCAGGGTTTTGGAATGAACATGGAGAATTCAAGGAGTTGAGGATCAACAATGGAGAAATTTATCAGGTTTGGATTGAATGCTTAAACTCTTTGGTTAATATTACAATGGCTGAATTGGGAATGAGAAAGCCTAGAAAACCATTGATATCTCTGTCTGTGGATTTCTCTGAATTGCTTTTGGATGAGATGTTTGTAGGATTTACAGCCTCCACAGGGCAATTAGTTCAAAGCCATAAGATATTATCATGGAGTTTTAGTACCTCTAATTTGTCAATTGGTGATGCTTTAGTAAGAACGAATTTTCCATCATTTGCTCCTCATAATGACTCTATTTTTAACTCAATAGCTTTCATTGTGGGGATAATTGTGGGTGGTTCTGGGCTTGTGATCATCTGTTGTATTGTGGTCTATGTTCTTGTAATTATCAAAAGAAGGGGAAGAAAGAAACCAATGGATGATGATATTGAAGATTGGGAGTTGGAATATTGGCCTCATCGGTTTGCTTATGATGATGTTTATGCAGCAACTGATGGGTTCTCAGAGGCCAATGTTGTTGGCTTTGGGCGTAATGGAATGGTCTATAAAGGGGAATTAGGGAGATCAAAGGTTGCTGTGAAGAAAATCTCTGTTGAAACTGAGTGTGGAATGAGGGAGTTTATGGCTGAGATTTCGAGTCTCAGACGATTAAAACATAGAAATTTAGTAAAACTTATAGGATGGTGCAAGAAAGAGAATGGAAGCTTGATCTTAGTGTATGAATTCATGGAAAATGGAAGTTTAGACAAGAAGTTGTTTGAGTGTGATGAGAATACGACGCTGAGTTGGGAGAAAAGGATGAAGGTTTTGAGCGATGTAGCGACGGGGCTGCTATATCTGCATCAAGGTTGGGATTACAAGGTTATACATAGTGACGTTAAAGCAAACAACGTGCTACTCGACAAGGACATGAATGCAAGGTTAGGAGACTTCGGGTTGGCTCGAATGCAACCCAACAAGAGAATGGTAGACAAAAAGCAAGTGGTGGGAACTGTTGGGTACCTGGCGCCAGAGGTGGTTCGAACAGGGCGAGTATCGATGCAAGGCGACGTTTTCGGGTTCGGGGTGTTGGTTTTGGAGGTGGTTTGTGGGCGGAGAGCAATGGAAGAAGGGAAGCCATTGTTGGTAGATTGGATGAGAGGAGTAATGGAGAGGAATGAGGTTGTAGTGGCTGTTGATGAGAGATTGAAAGTTGAAGAGGTTGGAGAAGAGATTGATGAAATGGAGAGAATGGTTTGTTTGGGATTATTATGTGCACATCCTGAGGCTGGTGCAAGGCCAACAATGCAACAAGTTATGAACATCTTGGGTGAGATAAACGGAGATAACTCAAATCATCGAACGTTTGAACAAATCAAAACATCTTCTTCTTCAACATCCTTCGTTGAATCAGACGTTTTAAAGAGTGGTCGTTAG 1965 42.09 MSSSSITLFCAVISILISMSMSVSATEFIFNTNFTSTNTLLFGNATVDSSVLILTRDSTFTIGRALYPSKIPVRFSDSSFSFATSFIFSVTPQPNHLPGHGFAFLFTPSTGINGTSSAQNLGLFNFTTNGNPNNHVFAVEFDSFQNQEFNDSNDNHVGVDLNSLESTASSTAGFWNEHGEFKELRINNGEIYQVWIECLNSLVNITMAELGMRKPRKPLISLSVDFSELLLDEMFVGFTASTGQLVQSHKILSWSFSTSNLSIGDALVRTNFPSFAPHNDSIFNSIAFIVGIIVGGSGLVIICCIVVYVLVIIKRRGRKKPMDDDIEDWELEYWPHRFAYDDVYAATDGFSEANVVGFGRNGMVYKGELGRSKVAVKKISVETECGMREFMAEISSLRRLKHRNLVKLIGWCKKENGSLILVYEFMENGSLDKKLFECDENTTLSWEKRMKVLSDVATGLLYLHQGWDYKVIHSDVKANNVLLDKDMNARLGDFGLARMQPNKRMVDKKQVVGTVGYLAPEVVRTGRVSMQGDVFGFGVLVLEVVCGRRAMEEGKPLLVDWMRGVMERNEVVVAVDERLKVEEVGEEIDEMERMVCLGLLCAHPEAGARPTMQQVMNILGEINGDNSNHRTFEQIKTSSSSTSFVESDVLKSGR 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12473256 12475220 + CmaCh11G018810.1 Cma11g01881 304390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01881 654 Pfam Legume lectin domain 26 260 IPR001220 GO:0030246
Cma11g01881 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 259 IPR013320 -
Cma11g01881 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cma11g01881 654 Gene3D Phosphorylase Kinase; domain 1 335 425 - -
Cma11g01881 654 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 14 633 - -
Cma11g01881 654 Gene3D - 24 265 - -
Cma11g01881 654 ProSiteProfiles Protein kinase domain profile. 350 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01881 654 Gene3D Transferase(Phosphotransferase) domain 1 426 645 - -
Cma11g01881 654 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01881 654 CDD lectin_legume_LecRK_Arcelin_ConA 26 259 IPR001220 GO:0030246
Cma11g01881 654 PANTHER - 14 633 - -
Cma11g01881 654 Coils Coil 574 594 - -
Cma11g01881 654 SUPERFAMILY Protein kinase-like (PK-like) 325 619 IPR011009 -
Cma11g01881 654 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Cma11g01881 654 SMART serkin_6 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00097 Cma11g01881 CCT
Cma11g01881 Cma20g00202 CCT
Cma11g01881 Cma20g00202 ECH
Cma02g00097 Cma11g01881 ECH
Cma11g01881 Cma19g00989 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01881 Cma-Chr11:12473256 Cma19g00989 Cma-Chr19:8609121 0 dispersed
Cma11g01881 Cma-Chr11:12473256 Cma13g00642 Cma-Chr13:6083816 0 wgd
Cma11g01881 Cma-Chr11:12473256 Cma18g00370 Cma-Chr18:2011296 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68930 PF00069 Pkinase 2.00E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01881 - - csv:101216388 970.689