Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01888 ATGGCTTCATCCAGAGAGCGCGAGAACTTCGTTTACATCGCCAAGCTCGCCGAGCAGGCCGAGCGTTATGATGAAATGGTAGATGCAATGAAGAATGTTGCAAAGCTTGATGTCGAATTGACAGTGGAGGAAAGAAATTTACTCTCTGTTGGGTACAAGAATGTGGTTGGTGCAAGGAGAGCCTCATGGAGGATTTTATCATCAATAGAGCAGAAAGAAGAAGCTAAAGGAAATGAAACAAATGCCAAGCGCATCAAGGAGTACAGACAAAAGGTTGAAACAGAGCTCTCTGGTATTTGTACTGATATCATGACAGTGATTGACGAACACCTAATTCCCTCTGCTTCAGCTGGGGAATCAACAGTGTTCTACTATAAGATGAAAGGAGATTATTATCGTTACCTTGCAGAATTTAAGTCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACTAGCTCAGCCGAATCTGAATTGCCTCCTACACATCCTATCCGCTTGGGTTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATCCTGAATTCACCTGAAAGGGCTTGCCACCTTGCAAAGCAAGCTTTTGATGGAGCCATCTCCGAACTTGACACCCTCAATGAGGAGTCTTACAAAGATAGCACCTTAATCATGCAGCTTCTTAGAGACAACCTCACATTATGGACTTCTGACATCCCAGAGGATGGAGATGATGCCCAAAAGGTCAACGGCACCGTCAAAGTTGCTGGTGGCGACGATGAGGTGAGTAGATCGAACCTTTTTCCTTAA 807 43.74 MASSRERENFVYIAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVETELSGICTDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDGAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKVNGTVKVAGGDDEVSRSNLFP 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12509581 12513202 - CmaCh11G018880.1 Cma11g01888 304397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01888 268 Coils Coil 13 33 - -
Cma11g01888 268 PIRSF 14-3-3 1 247 IPR000308 -
Cma11g01888 268 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Cma11g01888 268 Pfam 14-3-3 protein 14 235 IPR023410 -
Cma11g01888 268 SMART 1433_4 7 248 IPR023410 -
Cma11g01888 268 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 3 246 - -
Cma11g01888 268 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Cma11g01888 268 Gene3D - 1 250 IPR036815 -
Cma11g01888 268 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Cma11g01888 268 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Cma11g01888 268 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Cma11g01888 268 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Cma11g01888 268 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Cma11g01888 268 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Cma11g01888 268 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Cma11g01888 268 PANTHER 14-3-3 PROTEIN 3 246 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01607 Cma-Chr1:11072379 Cma11g01888 Cma-Chr11:12509581 7.40E-136 dispersed
Cma05g00448 Cma-Chr5:2058099 Cma11g01888 Cma-Chr11:12509581 2.98E-145 dispersed
Cma05g00501 Cma-Chr5:2374954 Cma11g01888 Cma-Chr11:12509581 7.50E-134 dispersed
Cma11g01888 Cma-Chr11:12509581 Cma12g00101 Cma-Chr12:400660 1.63E-146 dispersed
Cma11g01888 Cma-Chr11:12509581 Cma19g01027 Cma-Chr19:8778030 4.65E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01888 K06630 - csv:101208446 486.108