Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01895 | ATGGAAGTCGACGAAGAGTACCGAAGAAAAGAGCAACTCGTTCTTGTGGCAATTGTTGTACTCGCTTCCTTGGCTCTCGTTTCTTTGCTCGTCGCTTTCAGCTATTACTGCTATATCAGCAATAAGGTCTCTAAACGCCTCAAAATCCGCAAAAGGGATGATCTTGAGAAGGGAGGTAGTTTTGACAATGTTAAAGAATTTTCCACCGAGAAAGGCCTCCAAGTGTTCACCTTCAAGCAGCTATACTCAGCTACCTGTGGCTTTAGCAAGTCAAATGTGGTCGGGCACGGTAGCTTTGGATATGTATACCGAGGAGTTCTCAACGATGGGAGAAAGGTTGCGATTAAGCTTATGGATCAAGCAGGGAAGCAGGGAGAGGATGAATTTAAAGTGGAGGTGGAATTGTTAAGTCGACTTCATTCACCATATTTGTTGGCCTTGCTCGGGTATTGCTCTAATAGCAATCATAAATTGCTGGTGTACGAGTTCATGGCTAATGGCGGTCTGCAAGAACATCTGTATCCTGTTAGCAGTTCAAATTCAGTCAGTGTTAAGTTGGACTGGGAAACGCGGTTGAGAGTTGCGCTTGAAGCTGCCAAAGGTTTGGAGTATTTACATGAACATGTAAGCCCCCCAATAATTCATAGGGATTTCAAGAGCAGCAATGTTCTGTTGGACAAAAATCTTCATGCCAAGGTTTCTGATTTTGGATTGGCAAAGATCGGTTCAGACAAAGTCGGGGGACATGTATCCACTCGAGTACTGGGGACACAAGGATATGTTGCGCCTGAGTATGCGCTAACAGGGCATTTGACAACAAAGTCAGATGTCTATAGTTACGGGGTTGTCCTCTTGGAGCTGCTTACAGGCAGAGTTCCAGTTGATATGAAGAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCCGAGGCTGACTGATAGGGAGAAAGTGATGCATATAATGGACCCTGCATTGGAGGGTCAATACTCCATGAAGGATGTTGTTCAAGTTGCAGCCATAGCCGCAATGTGTGTTCAACCAGAGGCAGATTACAGGCCGCTGATGGCCGATGTTGTCCAGTCACTGGTTCCACTGGTGAGAAATTACAGGACAGCTTCGAAGATTGGTAGCGGTTCTAGTTCCAGCGCTACCAAGTCGCCTGTGGCGCACGACAAGGCTAGTTCGGAAGACTGA | 1200 | 46.5 | MEVDEEYRRKEQLVLVAIVVLASLALVSLLVAFSYYCYISNKVSKRLKIRKRDDLEKGGSFDNVKEFSTEKGLQVFTFKQLYSATCGFSKSNVVGHGSFGYVYRGVLNDGRKVAIKLMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSNSNHKLLVYEFMANGGLQEHLYPVSSSNSVSVKLDWETRLRVALEAAKGLEYLHEHVSPPIIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRTPGEASLVSWALPRLTDREKVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVRNYRTASKIGSGSSSSATKSPVAHDKASSED | 399 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12565768 | 12569299 | + | CmaCh11G018950.1 | Cma11g01895 | 304404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01895 | 399 | MobiDBLite | consensus disorder prediction | 375 | 399 | - | - | |
Cma11g01895 | 399 | Gene3D | Phosphorylase Kinase; domain 1 | 51 | 163 | - | - | |
Cma11g01895 | 399 | PANTHER | OS07G0227300 PROTEIN | 3 | 396 | - | - | |
Cma11g01895 | 399 | MobiDBLite | consensus disorder prediction | 375 | 391 | - | - | |
Cma11g01895 | 399 | ProSitePatterns | Protein kinases ATP-binding region signature. | 94 | 116 | IPR017441 | GO:0005524 | |
Cma11g01895 | 399 | Gene3D | Transferase(Phosphotransferase) domain 1 | 164 | 383 | - | - | |
Cma11g01895 | 399 | CDD | STKc_IRAK | 94 | 367 | - | - | |
Cma11g01895 | 399 | ProSiteProfiles | Protein kinase domain profile. | 88 | 368 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01895 | 399 | PANTHER | OS01G0750732 PROTEIN | 3 | 396 | - | - | |
Cma11g01895 | 399 | Pfam | Protein tyrosine and serine/threonine kinase | 91 | 364 | IPR001245 | GO:0004672|GO:0006468 | |
Cma11g01895 | 399 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 213 | 225 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01895 | 399 | SUPERFAMILY | Protein kinase-like (PK-like) | 62 | 364 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01895 | Cma19g01016 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01895 | Cma-Chr11:12565768 | Cma06g00343 | Cma-Chr6:1593759 | 2.63E-109 | dispersed | |
Cma10g01071 | Cma-Chr10:6785035 | Cma11g01895 | Cma-Chr11:12565768 | 2.84E-140 | transposed | |
Cma11g01121 | Cma-Chr11:6304589 | Cma11g01895 | Cma-Chr11:12565768 | 1.60E-141 | transposed | |
Cma11g01895 | Cma-Chr11:12565768 | Cma19g01016 | Cma-Chr19:8728616 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68931 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-44 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01895 | - | - | csv:101204636 | 706.442 |