Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01896 ATGGCGTCCATTTCCCATCTTTTTATTGTTCTTTCCCTTTTAGCCTTCTCAGCCAATGCTCAGCTCTCAGCCAACTTTTACGCTAAAAGTTGTCCCAATCTCGAACGAATTGTTCGTTCCGTTATGAACAAAGCTGTTATTGCAGAAAAACGTATAGGAGCTTCAATTCTTCGCCTGTTCTTCCACGATTGCTTTGTTAATGGTTGTGATGGTAGTATATTGCTCGATGATACACCGACATTTACGGGCGAAAAAAATGCATTTCCTAATCGAGACTCAGTTAGAGGGTTCGAAGTGATTGACAAAATTAAAACCGAAGTCGAAGCTACTTGCAAGAACACCGTTTCTTGTGCTGATATTCTTGCTCTTGCCACTCGAGATGGGGTTGATTTGCTTGGAGGTCCTGATTGGAAAGTACCACTTGGTCGGAAGGATTCGAGGACGGCGAGCGAGAGTGACGCTAACAGCGACCTCCCGGGGCCAGGCTCCAACCTCCCGACGCTCATCTCGATGTTCAATGCCAAAGGCTTCAACGCCGATGAGATGACTACCCTCTCCGGCGCCCATACCATTGGTATGGCTAGTTGTCGATTCTTCCGAAGACGCATTTACAACGATACCAACATCGATCCCGCCTTCGCCAAACAGAAGAGAGCCAACTGTCCGTTCACGGGCGGCGACATGAACTTGGCCCCTCTCGACTCGACCACCCAGAGGTTCGACAACCAATATTTCAAAGACTTGATTGAACTGCGCGGGCTGTTACATTCGGACCAAGAGCTCTTCAACGGCGGCTCACAAGACGCCTTGGTTCAGACTTACAGTAAAAGTCTCCTAACCTTTAGAAAGGATTTCGTAAACGCAATGATTAAGATGGGGAATCTTAGTCCTCCGTCTGGATTACCCACTGAGATTAGACGAAATTGCAGGACTGCACTCTCCGTGATTCTGAAATGGACTCCGATAAGGTACAGTAGTTTCAACTATTTGATGTTTCAAGCCTTAATGGAAATGTCATCGACTGTTGTAGAGAGCAAGGATGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGAAAAAATGGCGAGCCAAAACAGACTATTAGCTACATGGCGGAACGTGTTGTAGGTTCCGGATCGTTTGGAATCGTTTTCCAGGCTAAATGCTTGGAAACTGGGGAGACTTTTGCAATAAAGAAAGTCTTGCAGGACAGACGTTACAAAAATCGTGAGCTGCAGTTGATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCACTGTTTTTTTTCTACAACCAGTAAAGATGAACTCTTCTTAAATCTGGTTATGGAATACGTTCCGGAGACTATGTATCGAGTACTGAGGCACTACTGCACTATGAACCAGAGGATGCCACTCATCTATGTGAAACTTTACACTTATCAAATCTTTAGGGGGCTAGCTTATATACACATTGTTCCAGGGGTTTGTCATCGAGATGTAAAGCCTCACAATCTTTTGGTCGATCCTCTCACGCATCAGGTCAAGCTTTGTGATTTTGGCAGCGCAAAAGTCCTGGTTAAAGGTGAAGCAAACATCTCGTACATATGCTCCCGTTACTACCGAGCTCCTGAGCTCATATTTGGTGCAACGGAGTATTCTACGTCCATCGACATATGGTCAGCTGGTTGTGTTCTTGCCGAGCTGCTTCTAGGACAGCCATTGTTTCCTGGGGAAAGTGCAGTTGATCAACTGGTTGAGATAATCAAGGTGAAGCCTATTTCCTGGTTCAGTGAGAACATATTCCTTGTGGTCATGGAAGTATTCCACAAACGAATGCCACCTGAAGCTATTGACCTTGCTTCAAGGCTTCTTCAATATTCACCCGGTCTCCGGTGCACTGCTATTGAAGCATGTGCGCATCCCTTCTTTGATGAGCTTCGGGAGCCTAATGCCCGCCTTCCCAATGGCCGTCAGCTGCCCCCGATCTTCAATTTTAAACAGGAACTTTCCGGAGCCTCGCCTGAATTGATAAAGAGGCTCATACCAGAGCATGTTCGGCGGCAGGCTGGACTGCAATTCCCACATCAAGCAGATTTGTTGCCGGAGGGGAACAAAAAGGAAAGAGAAGCTTCACTTCTTTTACTGCAGGCAGAGAAGAAAAGCAATCAAACGGGATATCTGCCGATGAGAACCAATAATGCGGAGCATGAAAAGTTGACGGTCGTCATTTTCTGTAAGCATATTTTTAGTATTTTTGTCACTTTCATTCTATTTTCGGTTCTTCTTCAAACATATTTTCTTCCTTTCCTTTCATTTGTCCCTCTGAGCGTCCTCTTTGCAATGATTTTTCAAAATGTTAGAAATTTCATATCTCCAAATTTTAGGCCCATATTGAACTTGTTTTCTCATCATTTCTTCACAATGATTTTCGTTTTTCTTTAA 2433 44.76 MASISHLFIVLSLLAFSANAQLSANFYAKSCPNLERIVRSVMNKAVIAEKRIGASILRLFFHDCFVNGCDGSILLDDTPTFTGEKNAFPNRDSVRGFEVIDKIKTEVEATCKNTVSCADILALATRDGVDLLGGPDWKVPLGRKDSRTASESDANSDLPGPGSNLPTLISMFNAKGFNADEMTTLSGAHTIGMASCRFFRRRIYNDTNIDPAFAKQKRANCPFTGGDMNLAPLDSTTQRFDNQYFKDLIELRGLLHSDQELFNGGSQDALVQTYSKSLLTFRKDFVNAMIKMGNLSPPSGLPTEIRRNCRTALSVILKWTPIRYSSFNYLMFQALMEMSSTVVESKDAVTGHIISTTIGGKNGEPKQTISYMAERVVGSGSFGIVFQAKCLETGETFAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLRHYCTMNQRMPLIYVKLYTYQIFRGLAYIHIVPGVCHRDVKPHNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVKPISWFSENIFLVVMEVFHKRMPPEAIDLASRLLQYSPGLRCTAIEACAHPFFDELREPNARLPNGRQLPPIFNFKQELSGASPELIKRLIPEHVRRQAGLQFPHQADLLPEGNKKEREASLLLLQAEKKSNQTGYLPMRTNNAEHEKLTVVIFCKHIFSIFVTFILFSVLLQTYFLPFLSFVPLSVLFAMIFQNVRNFISPNFRPILNLFSHHFFTMIFVFL 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12570372 12578896 + CmaCh11G018960.1 Cma11g01896 304405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01896 810 Gene3D - 25 310 - -
Cma11g01896 810 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 CDD secretory_peroxidase 21 310 IPR033905 GO:0004601|GO:0042744
Cma11g01896 810 Gene3D Phosphorylase Kinase; domain 1 356 450 - -
Cma11g01896 810 SUPERFAMILY Heme-dependent peroxidases 21 311 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 ProSitePatterns Protein kinases ATP-binding region signature. 377 401 IPR017441 GO:0005524
Cma11g01896 810 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 SMART serkin_6 371 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01896 810 Gene3D Transferase(Phosphotransferase) domain 1 451 683 - -
Cma11g01896 810 Gene3D Peroxidase, domain 2 159 292 - -
Cma11g01896 810 PANTHER OS02G0236200 PROTEIN 338 688 - -
Cma11g01896 810 Pfam Protein kinase domain 371 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01896 810 SUPERFAMILY Protein kinase-like (PK-like) 370 664 IPR011009 -
Cma11g01896 810 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Cma11g01896 810 ProSiteProfiles Protein kinase domain profile. 371 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g01896 810 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 338 688 - -
Cma11g01896 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Cma11g01896 810 Pfam Peroxidase 38 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 MobiDBLite consensus disorder prediction 142 162 - -
Cma11g01896 810 ProSiteProfiles Plant heme peroxidase family profile. 21 313 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma11g01896 810 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cma11g01896 810 CDD STKc_GSK3 366 643 IPR039192 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01896 Cma19g01015 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01896 Cma-Chr11:12570372 Cma11g01441 Cma-Chr11:9486967 0 dispersed
Cma11g01896 Cma-Chr11:12570372 Cma19g01015 Cma-Chr19:8715805 0 wgd
Cma11g01896 Cma-Chr11:12570372 Cma02g00088 Cma-Chr2:439257 0 wgd
Cma11g01896 Cma-Chr11:12570372 Cma20g00210 Cma-Chr20:1003834 0 wgd
Cma11g01896 Cma-Chr11:12570372 Cma03g01327 Cma-Chr3:8543605 0 wgd
Cma11g01896 Cma-Chr11:12570372 Cma07g00180 Cma-Chr7:864574 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68932 PF00069 Pkinase 1.10E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01896 K14502 - qsu:111995841 637.491