Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01896 | ATGGCGTCCATTTCCCATCTTTTTATTGTTCTTTCCCTTTTAGCCTTCTCAGCCAATGCTCAGCTCTCAGCCAACTTTTACGCTAAAAGTTGTCCCAATCTCGAACGAATTGTTCGTTCCGTTATGAACAAAGCTGTTATTGCAGAAAAACGTATAGGAGCTTCAATTCTTCGCCTGTTCTTCCACGATTGCTTTGTTAATGGTTGTGATGGTAGTATATTGCTCGATGATACACCGACATTTACGGGCGAAAAAAATGCATTTCCTAATCGAGACTCAGTTAGAGGGTTCGAAGTGATTGACAAAATTAAAACCGAAGTCGAAGCTACTTGCAAGAACACCGTTTCTTGTGCTGATATTCTTGCTCTTGCCACTCGAGATGGGGTTGATTTGCTTGGAGGTCCTGATTGGAAAGTACCACTTGGTCGGAAGGATTCGAGGACGGCGAGCGAGAGTGACGCTAACAGCGACCTCCCGGGGCCAGGCTCCAACCTCCCGACGCTCATCTCGATGTTCAATGCCAAAGGCTTCAACGCCGATGAGATGACTACCCTCTCCGGCGCCCATACCATTGGTATGGCTAGTTGTCGATTCTTCCGAAGACGCATTTACAACGATACCAACATCGATCCCGCCTTCGCCAAACAGAAGAGAGCCAACTGTCCGTTCACGGGCGGCGACATGAACTTGGCCCCTCTCGACTCGACCACCCAGAGGTTCGACAACCAATATTTCAAAGACTTGATTGAACTGCGCGGGCTGTTACATTCGGACCAAGAGCTCTTCAACGGCGGCTCACAAGACGCCTTGGTTCAGACTTACAGTAAAAGTCTCCTAACCTTTAGAAAGGATTTCGTAAACGCAATGATTAAGATGGGGAATCTTAGTCCTCCGTCTGGATTACCCACTGAGATTAGACGAAATTGCAGGACTGCACTCTCCGTGATTCTGAAATGGACTCCGATAAGGTACAGTAGTTTCAACTATTTGATGTTTCAAGCCTTAATGGAAATGTCATCGACTGTTGTAGAGAGCAAGGATGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGAAAAAATGGCGAGCCAAAACAGACTATTAGCTACATGGCGGAACGTGTTGTAGGTTCCGGATCGTTTGGAATCGTTTTCCAGGCTAAATGCTTGGAAACTGGGGAGACTTTTGCAATAAAGAAAGTCTTGCAGGACAGACGTTACAAAAATCGTGAGCTGCAGTTGATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCACTGTTTTTTTTCTACAACCAGTAAAGATGAACTCTTCTTAAATCTGGTTATGGAATACGTTCCGGAGACTATGTATCGAGTACTGAGGCACTACTGCACTATGAACCAGAGGATGCCACTCATCTATGTGAAACTTTACACTTATCAAATCTTTAGGGGGCTAGCTTATATACACATTGTTCCAGGGGTTTGTCATCGAGATGTAAAGCCTCACAATCTTTTGGTCGATCCTCTCACGCATCAGGTCAAGCTTTGTGATTTTGGCAGCGCAAAAGTCCTGGTTAAAGGTGAAGCAAACATCTCGTACATATGCTCCCGTTACTACCGAGCTCCTGAGCTCATATTTGGTGCAACGGAGTATTCTACGTCCATCGACATATGGTCAGCTGGTTGTGTTCTTGCCGAGCTGCTTCTAGGACAGCCATTGTTTCCTGGGGAAAGTGCAGTTGATCAACTGGTTGAGATAATCAAGGTGAAGCCTATTTCCTGGTTCAGTGAGAACATATTCCTTGTGGTCATGGAAGTATTCCACAAACGAATGCCACCTGAAGCTATTGACCTTGCTTCAAGGCTTCTTCAATATTCACCCGGTCTCCGGTGCACTGCTATTGAAGCATGTGCGCATCCCTTCTTTGATGAGCTTCGGGAGCCTAATGCCCGCCTTCCCAATGGCCGTCAGCTGCCCCCGATCTTCAATTTTAAACAGGAACTTTCCGGAGCCTCGCCTGAATTGATAAAGAGGCTCATACCAGAGCATGTTCGGCGGCAGGCTGGACTGCAATTCCCACATCAAGCAGATTTGTTGCCGGAGGGGAACAAAAAGGAAAGAGAAGCTTCACTTCTTTTACTGCAGGCAGAGAAGAAAAGCAATCAAACGGGATATCTGCCGATGAGAACCAATAATGCGGAGCATGAAAAGTTGACGGTCGTCATTTTCTGTAAGCATATTTTTAGTATTTTTGTCACTTTCATTCTATTTTCGGTTCTTCTTCAAACATATTTTCTTCCTTTCCTTTCATTTGTCCCTCTGAGCGTCCTCTTTGCAATGATTTTTCAAAATGTTAGAAATTTCATATCTCCAAATTTTAGGCCCATATTGAACTTGTTTTCTCATCATTTCTTCACAATGATTTTCGTTTTTCTTTAA | 2433 | 44.76 | MASISHLFIVLSLLAFSANAQLSANFYAKSCPNLERIVRSVMNKAVIAEKRIGASILRLFFHDCFVNGCDGSILLDDTPTFTGEKNAFPNRDSVRGFEVIDKIKTEVEATCKNTVSCADILALATRDGVDLLGGPDWKVPLGRKDSRTASESDANSDLPGPGSNLPTLISMFNAKGFNADEMTTLSGAHTIGMASCRFFRRRIYNDTNIDPAFAKQKRANCPFTGGDMNLAPLDSTTQRFDNQYFKDLIELRGLLHSDQELFNGGSQDALVQTYSKSLLTFRKDFVNAMIKMGNLSPPSGLPTEIRRNCRTALSVILKWTPIRYSSFNYLMFQALMEMSSTVVESKDAVTGHIISTTIGGKNGEPKQTISYMAERVVGSGSFGIVFQAKCLETGETFAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLRHYCTMNQRMPLIYVKLYTYQIFRGLAYIHIVPGVCHRDVKPHNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVKPISWFSENIFLVVMEVFHKRMPPEAIDLASRLLQYSPGLRCTAIEACAHPFFDELREPNARLPNGRQLPPIFNFKQELSGASPELIKRLIPEHVRRQAGLQFPHQADLLPEGNKKEREASLLLLQAEKKSNQTGYLPMRTNNAEHEKLTVVIFCKHIFSIFVTFILFSVLLQTYFLPFLSFVPLSVLFAMIFQNVRNFISPNFRPILNLFSHHFFTMIFVFL | 810 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12570372 | 12578896 | + | CmaCh11G018960.1 | Cma11g01896 | 304405 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01896 | 810 | Gene3D | - | 25 | 310 | - | - | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 55 | 75 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 231 | 246 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 31 | 50 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 247 | 264 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 114 | 124 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 180 | 192 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 95 | 108 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 133 | 148 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Plant peroxidase signature | 287 | 300 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | CDD | secretory_peroxidase | 21 | 310 | IPR033905 | GO:0004601|GO:0042744 | |
Cma11g01896 | 810 | Gene3D | Phosphorylase Kinase; domain 1 | 356 | 450 | - | - | |
Cma11g01896 | 810 | SUPERFAMILY | Heme-dependent peroxidases | 21 | 311 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | ProSitePatterns | Protein kinases ATP-binding region signature. | 377 | 401 | IPR017441 | GO:0005524 | |
Cma11g01896 | 810 | PRINTS | Haem peroxidase superfamily signature | 233 | 248 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Haem peroxidase superfamily signature | 53 | 67 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Haem peroxidase superfamily signature | 133 | 145 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Haem peroxidase superfamily signature | 115 | 132 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | PRINTS | Haem peroxidase superfamily signature | 181 | 196 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | SMART | serkin_6 | 371 | 640 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01896 | 810 | Gene3D | Transferase(Phosphotransferase) domain 1 | 451 | 683 | - | - | |
Cma11g01896 | 810 | Gene3D | Peroxidase, domain 2 | 159 | 292 | - | - | |
Cma11g01896 | 810 | PANTHER | OS02G0236200 PROTEIN | 338 | 688 | - | - | |
Cma11g01896 | 810 | Pfam | Protein kinase domain | 371 | 640 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01896 | 810 | SUPERFAMILY | Protein kinase-like (PK-like) | 370 | 664 | IPR011009 | - | |
Cma11g01896 | 810 | ProSitePatterns | Peroxidases active site signature. | 53 | 64 | IPR019794 | GO:0004601 | |
Cma11g01896 | 810 | ProSiteProfiles | Protein kinase domain profile. | 371 | 640 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma11g01896 | 810 | PANTHER | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 338 | 688 | - | - | |
Cma11g01896 | 810 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 492 | 504 | IPR008271 | GO:0004672|GO:0006468 | |
Cma11g01896 | 810 | Pfam | Peroxidase | 38 | 277 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | MobiDBLite | consensus disorder prediction | 142 | 162 | - | - | |
Cma11g01896 | 810 | ProSiteProfiles | Plant heme peroxidase family profile. | 21 | 313 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Cma11g01896 | 810 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 181 | 191 | IPR019793 | - | |
Cma11g01896 | 810 | CDD | STKc_GSK3 | 366 | 643 | IPR039192 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01896 | Cma19g01015 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01896 | Cma-Chr11:12570372 | Cma11g01441 | Cma-Chr11:9486967 | 0 | dispersed | |
Cma11g01896 | Cma-Chr11:12570372 | Cma19g01015 | Cma-Chr19:8715805 | 0 | wgd | |
Cma11g01896 | Cma-Chr11:12570372 | Cma02g00088 | Cma-Chr2:439257 | 0 | wgd | |
Cma11g01896 | Cma-Chr11:12570372 | Cma20g00210 | Cma-Chr20:1003834 | 0 | wgd | |
Cma11g01896 | Cma-Chr11:12570372 | Cma03g01327 | Cma-Chr3:8543605 | 0 | wgd | |
Cma11g01896 | Cma-Chr11:12570372 | Cma07g00180 | Cma-Chr7:864574 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68932 | PF00069 | Pkinase | 1.10E-60 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01896 | K14502 | - | qsu:111995841 | 637.491 |