Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01907 ATGATTTCGAGATCGTACACAAATCTTTTAGATTTGGCGTCTGGAAATTTTCCAGCAATGGAAGTGAAACGGAAGCGGTTTCCACGGATCATGACAGTTCCAGGCGATGTAGGCGAGCTTGACGACGATCAGGCTTACAGCGTGACATCCGAAAATCCATCATCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCATTAAGAGCAAAACGAAGGGAAAATGACAATTCCTGGAGTTTCAATTGGAACGAAGATTCATTGCTTTTGCAGCTTAAAAGTGGTTTGCCAGAGGATATGGAGATTCTTTATGTTGGTTCTTTGAAAGTGGATATCCAACCAGACGAACAGGATGAGGTCTCCCAGGTTTTGTTGGAGAAATTTAAGTGTATTCCTACGTTTTTGCCTCCTCATGTTTTGGAAAAGTTTTATGATGGGTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATATTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCTTATGTATCAGCAAATAAGCTGTTCTTCCAGAAAGTGGTTGAGGTGATCAACCCAGATGATGACTATATTTGGATCCATGACTACCATTTGATGGTAATGCCCACGTTCTTGAGGAGGCGTTTTAACAGAGTTAAGATGGGATTTTTCCTTCACAGTCCATTTCCTTCATCTGAGATATACCGTACGCTTCCTGTTAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTTCACACTTTCGATTACGCTCGTCATTTCCTTTCGTGTTGCAGCCGAATGTTGGGTTTAGAGTATCAGTCGAAGAGGGGCTATCTTGGATTGGAATACTATGGGAGGACGATCGGGATAAAGATAATGCCTGTCGGTATTCATATGACTCGGATCGAGTCAGTGATGAGACTGGCAGACAAGGAATTTAAGACTAGGGAACTCACACAACAATTTGCAGGGAAGACGGTGTTGCTAGGTGTCGATGATATGGACATTTTCAAAGGAATCAACCTGAAATTGTTAGCTATGGAACAGGTGCTTGAGCAACATCCAAAGTGGCAGGGGAAGGCCGTACTGGTCCAAATTGTAAATCCTGCCAGAGGCAAGGGAAGGGATTTGGAAGAAATAGAAGATGAAATAAAAGAAAGTTGCAGAAGGATTAACAAGGAATATGGGGATTCTGGCTATGAGCCGATAGTACTTCTCGATAGGCATGTGCCAATTACCGAAAGGGTTGCTTATTATAGCATTGCGGAGTGCGTAGTTGTCACTGCTGTTCGAGATGGGATGAACTTAACTCCGTATGAGTACGTTGTCTGCAGACAGGGGATATCCTCCCAAGAAAGTTCAAACTTCCATGGACCGAAAAAGAGCATGCTCGTCATATCTGAGTTTATTGGATGTTCTCCATCACTAAGTGGAGCATTTCGTATCAACCCGTGGAATGTCGAAAGGACAGCAGAGGCTTTGAATGAAGCAATCTCAATGGCTGATACAGAGAAGCAGTTGCGACATGAGAAGCATTACCGTTATGTTGCTACTCACGATGTTGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATCGGTTTTAGTTTCGGTTTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATACCATTTTATCAGCTTACAGTAAGGCCGAAAGTCGGGCCATTCTTTTGGACTACGATGGCACCGTGATGCCTCAAAACTCCATAAATAAGTCACCGAGTCAGCAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATTCAAAAAATGTAGTCTTCATTGTGAGTGGACGTGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCTTGCAAGAAGCTTGGAATTGCTGCAGAACATGGATATCTTTTGAGGCAGTCACAGGACGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTCGGGTGGATGCAGATTGCTGAACCTGTTATGAACTTATATACGGAGGCTACAGATGGTTCATCTATTGAACGAAAGGAAAGTGCCTTGGTCTGGCAGTATAGAGATGCAGATCCTGGTTTTGGATCTTCCCAGGCTAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCCGTTGCAGTCAAAAGCGGTCAATTCATCGTCGAAGTGAAACCACAGGGGGTTACCAAAGGCTTAGTAGCTGAAAAGATTTTTTCAACAATGGCTGAGGATGGAAAACTTGCCGACTTTGTGTTGTGTATTGGCGACGACAGATCCGATGAGGACATGTTTGAAATAATTGGTAATGCATTGTCCAGTAATATTCTTTCTTCTTCGACGTCGGTTTTTGCCTGCACTGTTGGACAGAAGCCGAGCAAAGCGAAATATTATTTAGACGACACAGCTGAAGTGATAAGCATGCTAGAATACCTCACCGAAGCTTCTTGCCCGTTGCCATCCTCCGACAATGAAGATGGTGAAAACGCTTCCTGA 2568 43.57 MISRSYTNLLDLASGNFPAMEVKRKRFPRIMTVPGDVGELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRRENDNSWSFNWNEDSLLLQLKSGLPEDMEILYVGSLKVDIQPDEQDEVSQVLLEKFKCIPTFLPPHVLEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVMPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMTRIESVMRLADKEFKTRELTQQFAGKTVLLGVDDMDIFKGINLKLLAMEQVLEQHPKWQGKAVLVQIVNPARGKGRDLEEIEDEIKESCRRINKEYGDSGYEPIVLLDRHVPITERVAYYSIAECVVVTAVRDGMNLTPYEYVVCRQGISSQESSNFHGPKKSMLVISEFIGCSPSLSGAFRINPWNVERTAEALNEAISMADTEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDTILSAYSKAESRAILLDYDGTVMPQNSINKSPSQQVISILNTLCADSKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYLLRQSQDEEWKICGQSSDFGWMQIAEPVMNLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSTMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSSSTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLTEASCPLPSSDNEDGENAS 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12613065 12616000 + CmaCh11G019070.1 Cma11g01907 304416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01907 855 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 591 795 IPR006379 -
Cma11g01907 855 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 848 - -
Cma11g01907 855 Gene3D Glycogen Phosphorylase B; 314 526 - -
Cma11g01907 855 Gene3D - 588 689 IPR023214 -
Cma11g01907 855 Gene3D - 717 844 IPR023214 -
Cma11g01907 855 CDD GT20_TPS 60 542 IPR001830 GO:0003824|GO:0005992
Cma11g01907 855 TIGRFAM T6PP: trehalose-phosphatase 587 837 IPR003337 GO:0003824|GO:0005992
Cma11g01907 855 CDD HAD_TPP 590 829 - -
Cma11g01907 855 SUPERFAMILY HAD-like 589 836 IPR036412 -
Cma11g01907 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 848 IPR001830 GO:0003824|GO:0005992
Cma11g01907 855 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cma11g01907 855 Pfam Glycosyltransferase family 20 60 542 IPR001830 GO:0003824|GO:0005992
Cma11g01907 855 Pfam Trehalose-phosphatase 592 826 IPR003337 GO:0003824|GO:0005992
Cma11g01907 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 545 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01907 Cma19g01006 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01907 Cma-Chr11:12613065 Cma16g01174 Cma-Chr16:8986427 0 dispersed
Cma11g01907 Cma-Chr11:12613065 Cma18g00443 Cma-Chr18:2444622 4.03E-139 wgd
Cma11g01907 Cma-Chr11:12613065 Cma19g01006 Cma-Chr19:8674708 0 wgd
Cma11g01907 Cma-Chr11:12613065 Cma03g01336 Cma-Chr3:8580070 0 wgd
Cma11g01907 Cma-Chr11:12613065 Cma07g00170 Cma-Chr7:828739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01907 K16055 - csv:101209914 1626.68