Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01910 ATGGTTTCCAAAGAGAAATCCACCGCCAAAAAGCTTCCTCCTCTCTGCAACACCAACAACAATGCCAGAGAACTCCATTTCCGAGGCGTTCGTAAGAGGCCTTGGGGCCGATACGCCGCCGAGATCCGAGATCCTGGCAAGAAGAGCCGCGTTTGGCTCGGAACCTTCGATACGGCAGAGGAGGCGGCGTATGCTTACGATAACGCCGCGCGCCAGTTCCGCGGCGCAAAAGCTAAAACCAATTTCCCTCTACCTGATGAGTTGATCGACGTTTCTCCTCGCAAGATCAGCCAAAGCCCTAGCCCTAGCAGCACCGTCGAATCCTCTTCCTCCTCCAGCCAAGAAAAAACTCCCTCACCGGAGATCGTCCGTAGCTACGGCGTCGCACGAACTTTTCCGTTCATTCAGCCGCAGTTTTTGCATCAAGTCGGCGGAGGCGGTAGCGCTCGTCCTGTTTTGTTCATGGATGCTTTTGTTCGACCTGAGTTTGTTGCTCAGGGCTATCCTATTCGGTACGATTCGGCAAGGTTCGCCGGCGAGATCCAGACCAAATCGGATTCATTGTCCGTGGTTGACTGCCGGCCGGCGAAGGAAATTCTCAATCTCGATCTTAATCTCGCTCCGCCCGTGGATGCTTGA 639 54.62 MVSKEKSTAKKLPPLCNTNNNARELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAYAYDNAARQFRGAKAKTNFPLPDELIDVSPRKISQSPSPSSTVESSSSSSQEKTPSPEIVRSYGVARTFPFIQPQFLHQVGGGGSARPVLFMDAFVRPEFVAQGYPIRYDSARFAGEIQTKSDSLSVVDCRPAKEILNLDLNLAPPVDA 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12628044 12628682 + CmaCh11G019100.1 Cma11g01910 304419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01910 212 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Cma11g01910 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 136 - -
Cma11g01910 212 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g01910 212 MobiDBLite consensus disorder prediction 94 120 - -
Cma11g01910 212 PANTHER ERF DOMAIN PROTEIN 9-RELATED 15 136 - -
Cma11g01910 212 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Cma11g01910 212 MobiDBLite consensus disorder prediction 90 120 - -
Cma11g01910 212 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Cma11g01910 212 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Cma11g01910 212 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cma11g01910 212 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Cma11g01910 212 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Cma11g01910 212 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01910 Cma20g00238 CCT
Cma02g00060 Cma11g01910 CCT
Cma11g01910 Cma20g00238 ECH
Cma02g00060 Cma11g01910 ECH
Cma11g01910 Cma19g00998 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01222 Cma-Chr1:8835781 Cma11g01910 Cma-Chr11:12628044 2.05E-36 dispersed
Cma09g00846 Cma-Chr9:4147500 Cma11g01910 Cma-Chr11:12628044 8.16E-37 dispersed
Cma11g01910 Cma-Chr11:12628044 Cma20g00238 Cma-Chr20:1154440 7.29E-34 dispersed
Cma18g00388 Cma-Chr18:2117705 Cma11g01910 Cma-Chr11:12628044 1.73E-42 dispersed
Cma11g01910 Cma-Chr11:12628044 Cma19g00998 Cma-Chr19:8657974 3.14E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35935 PF00847 AP2 2.00E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01910 K09286 - csv:101210659 273.478