Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01912 ATGAGCAGTGTTTGTGCTGAGAATCAGAAATATCAGTTTCATTTTCAATTTCCTCCTCCTCCTTCTTCTTCTTCTGATTTTGTTGTTTCTGAGAGGATTCCTTTTCTGAAGGATATCAACGTTCCGCCGAGGAAGCTTCTTGCGGCGCGACGAGATCAAAACGCTGAAATGTGTTCTGATTCGCCGCGATTCTCGTTTGCTGTTGAATCGCTTTTGCAGAAGTTTTTGCCGTTCAATGGCGAGGATGAGGCGGAGGAGGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCTCGTCGGCGGGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGGCGTGGTGGATGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTCTTCGAGTGTTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTCTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGGTGAGTAACTTTCAAGGCGGTGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTTCAAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCGGAATGTCTCATCTCTCTCCGCCGCATTCACCACCGCTCTCGCCGGGAAATCCTCGATCGATGAATGGATTTTCGCCTATTTCAAGGTATAGTAATCCTGATCAGTCTAAGTTAAAGGGAGTTTTGAGCTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCCATGAATATCGACGACGCTAATGCCACTTTAGCGGCCGCCATCCCCGCCCCTAGACCAACGCCTTGGATCGATGTTTCATCTCTTAATCCTGAAGATGAACTGCAGTTTATTCTCTCCCCTTCCACTCCAAACATCTCAGCCGCGTCGGCGAATTTATCCTGTGAGCATAAAACTAACGCCGACAATGGATGGGCATCCACCTCCGGTCCCGATCTCGGATGGGTAATCAATGATAGGAAAGATTGGCCAAGGGAGACTTACAAATATGGTTATCCAAAAGAGACTCATTACGAAATGAAGTTGCAACATTTAACCTACAGCAAAAAGATGGGAGCTTACTTGGTCTCCAAAGTCACTACAAAAGCCTGTAACCAAATGCACCCAGATAGAGCCACCATTGAAACCTCCACCATTTCACTCTTTTCGTTAGCATAG 1353 48.63 MSSVCAENQKYQFHFQFPPPPSSSSDFVVSERIPFLKDINVPPRKLLAARRDQNAEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGGSCSSPNKKSSNLRSAAGSNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGNPRSMNGFSPISRYSNPDQSKLKGVLSYKDALTELMSSIESMNIDDANATLAAAIPAPRPTPWIDVSSLNPEDELQFILSPSTPNISAASANLSCEHKTNADNGWASTSGPDLGWVINDRKDWPRETYKYGYPKETHYEMKLQHLTYSKKMGAYLVSKVTTKACNQMHPDRATIETSTISLFSLA 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12641174 12646228 - CmaCh11G019120.1 Cma11g01912 304421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01912 450 PANTHER UNKEMPT FAMILY MEMBER 38 381 IPR045234 -
Cma11g01912 450 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Cma11g01912 450 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Cma11g01912 450 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Cma11g01912 450 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 38 381 - -
Cma11g01912 450 Gene3D - 135 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01912 Cma-Chr11:12641174 Cma12g01284 Cma-Chr12:9983593 9.09E-64 dispersed
Cma11g01912 Cma-Chr11:12641174 Cma19g00995 Cma-Chr19:8638814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35936 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01912 K23047 - csv:101211149 567.385