Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01913 ATGACCACCGGGAGAGAAATCCTCCACAAAATGAAGGTGAAGGCAGGGTTTTGTTCTTCGGCGCCGGATACTGCTGCCAAAGGGAAGGCCAAAGCGACCAAGAATCACATAAGCCATGGCAGCCATTTGGTTAAGGGCAAGACCAACCACCCCATGGAAGATTACTTAGTCACTGATTTCAAGCGCGTCAAGGACCACGAGTTGGGTTTGTTTGCCATTTTCGACGGCCATTTAGGCCATGATGTTGCCAATTTCTTGCAGAATAATCTCTTTGATAATATCCTCAAACAGGCTGATTTCTGGAGCGAAACGAGAAAGGCCATCAAAAGAGCGTACAAGAAAACAGACGATGAAATATTGGATAAAGTAAAGCAGCTGGGAAGAGGAGGATCAACGGCGGTAACCGCCATATTGATCGACGGCCACAAACTCGTCGTTGCTAACGTCGGAGATTCCAGAGCCGTTCTTTGCAAAAACGGCGTCGCTGAGCAGCTCTCCGTTGACCACGAACCCAGTAAAGAAAAAAGGGATATTGAAAGCCGTGGAGGCTTCGTATCAAATCTTCCAGGCGATGTACCACGTGTCGATGGACAATTGGCTGTTGCCAGAGCATTTGGTGATAAGAGCTTGAAACTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGATGCATCTACAGAGTTCATGATTTTGGCTAGCGATGGCATTTGGAAGGTAATGACAAACAAAGAGGCGGTGGAATCTATTAGACACATAAAGGACGCAAACGTGGCAGCCAAACGACTTATCGATGAAGCAGTATCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCAGTAA 861 46.92 MTTGREILHKMKVKAGFCSSAPDTAAKGKAKATKNHISHGSHLVKGKTNHPMEDYLVTDFKRVKDHELGLFAIFDGHLGHDVANFLQNNLFDNILKQADFWSETRKAIKRAYKKTDDEILDKVKQLGRGGSTAVTAILIDGHKLVVANVGDSRAVLCKNGVAEQLSVDHEPSKEKRDIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDVEVKTVDASTEFMILASDGIWKVMTNKEAVESIRHIKDANVAAKRLIDEAVSRKSKDDISCIVVRFQ 286
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 12647339 12649017 - CmaCh11G019130.1 Cma11g01913 304422
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01913 286 SMART PP2C_SIG_2 43 285 IPR001932 -
Cma11g01913 286 ProSiteProfiles PPM-type phosphatase domain profile. 38 285 IPR001932 -
Cma11g01913 286 SUPERFAMILY PP2C-like 34 285 IPR036457 -
Cma11g01913 286 CDD PP2Cc 37 285 IPR001932 -
Cma11g01913 286 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 3 286 - -
Cma11g01913 286 PANTHER PROTEIN PHOSPHATASE 2C 3 286 IPR015655 GO:0004722|GO:0006470
Cma11g01913 286 Pfam Protein phosphatase 2C 49 278 IPR001932 -
Cma11g01913 286 Gene3D - 14 286 IPR036457 -
Cma11g01913 286 SMART PP2C_4 28 283 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01076 Cma-Chr8:6703586 Cma11g01913 Cma-Chr11:12647339 2.02E-37 dispersed
Cma09g00853 Cma-Chr9:4185781 Cma11g01913 Cma-Chr11:12647339 7.16E-134 dispersed
Cma11g01913 Cma-Chr11:12647339 Cma16g00257 Cma-Chr16:1214713 7.26E-111 dispersed
Cma17g00154 Cma-Chr17:777326 Cma11g01913 Cma-Chr11:12647339 7.24E-42 dispersed
Cma11g01913 Cma-Chr11:12647339 Cma01g01606 Cma-Chr1:11067033 1.82E-113 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01913 K17506 - csv:101211399 497.664