Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma11g01913 | ATGACCACCGGGAGAGAAATCCTCCACAAAATGAAGGTGAAGGCAGGGTTTTGTTCTTCGGCGCCGGATACTGCTGCCAAAGGGAAGGCCAAAGCGACCAAGAATCACATAAGCCATGGCAGCCATTTGGTTAAGGGCAAGACCAACCACCCCATGGAAGATTACTTAGTCACTGATTTCAAGCGCGTCAAGGACCACGAGTTGGGTTTGTTTGCCATTTTCGACGGCCATTTAGGCCATGATGTTGCCAATTTCTTGCAGAATAATCTCTTTGATAATATCCTCAAACAGGCTGATTTCTGGAGCGAAACGAGAAAGGCCATCAAAAGAGCGTACAAGAAAACAGACGATGAAATATTGGATAAAGTAAAGCAGCTGGGAAGAGGAGGATCAACGGCGGTAACCGCCATATTGATCGACGGCCACAAACTCGTCGTTGCTAACGTCGGAGATTCCAGAGCCGTTCTTTGCAAAAACGGCGTCGCTGAGCAGCTCTCCGTTGACCACGAACCCAGTAAAGAAAAAAGGGATATTGAAAGCCGTGGAGGCTTCGTATCAAATCTTCCAGGCGATGTACCACGTGTCGATGGACAATTGGCTGTTGCCAGAGCATTTGGTGATAAGAGCTTGAAACTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTGGATGCATCTACAGAGTTCATGATTTTGGCTAGCGATGGCATTTGGAAGGTAATGACAAACAAAGAGGCGGTGGAATCTATTAGACACATAAAGGACGCAAACGTGGCAGCCAAACGACTTATCGATGAAGCAGTATCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCAGTAA | 861 | 46.92 | MTTGREILHKMKVKAGFCSSAPDTAAKGKAKATKNHISHGSHLVKGKTNHPMEDYLVTDFKRVKDHELGLFAIFDGHLGHDVANFLQNNLFDNILKQADFWSETRKAIKRAYKKTDDEILDKVKQLGRGGSTAVTAILIDGHKLVVANVGDSRAVLCKNGVAEQLSVDHEPSKEKRDIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDVEVKTVDASTEFMILASDGIWKVMTNKEAVESIRHIKDANVAAKRLIDEAVSRKSKDDISCIVVRFQ | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 12647339 | 12649017 | - | CmaCh11G019130.1 | Cma11g01913 | 304422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma11g01913 | 286 | SMART | PP2C_SIG_2 | 43 | 285 | IPR001932 | - | |
| Cma11g01913 | 286 | ProSiteProfiles | PPM-type phosphatase domain profile. | 38 | 285 | IPR001932 | - | |
| Cma11g01913 | 286 | SUPERFAMILY | PP2C-like | 34 | 285 | IPR036457 | - | |
| Cma11g01913 | 286 | CDD | PP2Cc | 37 | 285 | IPR001932 | - | |
| Cma11g01913 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 3 | 286 | - | - | |
| Cma11g01913 | 286 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 286 | IPR015655 | GO:0004722|GO:0006470 | |
| Cma11g01913 | 286 | Pfam | Protein phosphatase 2C | 49 | 278 | IPR001932 | - | |
| Cma11g01913 | 286 | Gene3D | - | 14 | 286 | IPR036457 | - | |
| Cma11g01913 | 286 | SMART | PP2C_4 | 28 | 283 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma08g01076 | Cma-Chr8:6703586 | Cma11g01913 | Cma-Chr11:12647339 | 2.02E-37 | dispersed | |
| Cma09g00853 | Cma-Chr9:4185781 | Cma11g01913 | Cma-Chr11:12647339 | 7.16E-134 | dispersed | |
| Cma11g01913 | Cma-Chr11:12647339 | Cma16g00257 | Cma-Chr16:1214713 | 7.26E-111 | dispersed | |
| Cma17g00154 | Cma-Chr17:777326 | Cma11g01913 | Cma-Chr11:12647339 | 7.24E-42 | dispersed | |
| Cma11g01913 | Cma-Chr11:12647339 | Cma01g01606 | Cma-Chr1:11067033 | 1.82E-113 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma11g01913 | K17506 | - | csv:101211399 | 497.664 |