Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01919 | ATGAGTGGCATAAGCCTGAGTGCCAAACATGGTAGCGTAGTCACTCATAATGACCATCACCACCACCACCCCCGTGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACCACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGAGTATACTGTGCCCCATCTCTGGACGACTCAAATGTTCAGGTCGTCGCCGGAATCGACTTAAACCACGGGGACATTGCCGGATTCCTTCCTAATGAATTAGGCCTTTTAACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTCTTCTTCATCTTCCAAACTTGACATATCTTGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTGGACGCCATTTTTATCAACAGCAATCGGTTCACCAACATAATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCGCAAGAAGTTGGGTTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATAAATTAGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAATTGAATTTGGCCCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGAGGGTTTCTTATAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGATGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGTTCCGGCTTCGGCGCCTATTTCTTCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA | 1173 | 46.12 | MSGISLSAKHGSVVTHNDHHHHHPRARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLDDSNVQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVLLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEVGFLYKLKVLDVSFNKLVGPLPYSLAGLAQLEQLNLAHNLFTGNLFEGLCNLPNLENVRVSYNYFCEEEGICRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAVPASAPISSTSSVVAPAHL | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12664848 | 12668330 | + | CmaCh11G019190.1 | Cma11g01919 | 304428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01919 | 390 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 7 | 385 | - | - | |
Cma11g01919 | 390 | SUPERFAMILY | L domain-like | 38 | 312 | - | - | |
Cma11g01919 | 390 | Gene3D | Ribonuclease Inhibitor | 39 | 203 | IPR032675 | - | |
Cma11g01919 | 390 | Gene3D | Ribonuclease Inhibitor | 204 | 325 | IPR032675 | - | |
Cma11g01919 | 390 | MobiDBLite | consensus disorder prediction | 15 | 29 | - | - | |
Cma11g01919 | 390 | Pfam | Leucine rich repeat | 109 | 166 | IPR001611 | GO:0005515 | |
Cma11g01919 | 390 | SMART | LRR_typ_2 | 154 | 178 | IPR003591 | - | |
Cma11g01919 | 390 | SMART | LRR_typ_2 | 273 | 293 | IPR003591 | - | |
Cma11g01919 | 390 | SMART | LRR_typ_2 | 249 | 272 | IPR003591 | - | |
Cma11g01919 | 390 | SMART | LRR_typ_2 | 106 | 129 | IPR003591 | - | |
Cma11g01919 | 390 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma11g01919 | 390 | Pfam | Leucine rich repeat N-terminal domain | 38 | 73 | IPR013210 | - | |
Cma11g01919 | 390 | PANTHER | EXTENSIN-LIKE PROTEIN | 7 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01919 | Cma-Chr11:12664848 | Cma14g01740 | Cma-Chr14:12740774 | 2.72E-122 | dispersed | |
Cma11g01919 | Cma-Chr11:12664848 | Cma09g00199 | Cma-Chr9:826607 | 7.88E-125 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01919 | - | - | cmos:111437069 | 707.212 |