Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01919 ATGAGTGGCATAAGCCTGAGTGCCAAACATGGTAGCGTAGTCACTCATAATGACCATCACCACCACCACCCCCGTGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACCACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGAGTATACTGTGCCCCATCTCTGGACGACTCAAATGTTCAGGTCGTCGCCGGAATCGACTTAAACCACGGGGACATTGCCGGATTCCTTCCTAATGAATTAGGCCTTTTAACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTCTTCTTCATCTTCCAAACTTGACATATCTTGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTGGACGCCATTTTTATCAACAGCAATCGGTTCACCAACATAATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCGCAAGAAGTTGGGTTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATAAATTAGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAATTGAATTTGGCCCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGAGGGTTTCTTATAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGATGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGTTCCGGCTTCGGCGCCTATTTCTTCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA 1173 46.12 MSGISLSAKHGSVVTHNDHHHHHPRARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLDDSNVQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVLLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEVGFLYKLKVLDVSFNKLVGPLPYSLAGLAQLEQLNLAHNLFTGNLFEGLCNLPNLENVRVSYNYFCEEEGICRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAVPASAPISSTSSVVAPAHL 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12664848 12668330 + CmaCh11G019190.1 Cma11g01919 304428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01919 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 385 - -
Cma11g01919 390 SUPERFAMILY L domain-like 38 312 - -
Cma11g01919 390 Gene3D Ribonuclease Inhibitor 39 203 IPR032675 -
Cma11g01919 390 Gene3D Ribonuclease Inhibitor 204 325 IPR032675 -
Cma11g01919 390 MobiDBLite consensus disorder prediction 15 29 - -
Cma11g01919 390 Pfam Leucine rich repeat 109 166 IPR001611 GO:0005515
Cma11g01919 390 SMART LRR_typ_2 154 178 IPR003591 -
Cma11g01919 390 SMART LRR_typ_2 273 293 IPR003591 -
Cma11g01919 390 SMART LRR_typ_2 249 272 IPR003591 -
Cma11g01919 390 SMART LRR_typ_2 106 129 IPR003591 -
Cma11g01919 390 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g01919 390 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Cma11g01919 390 PANTHER EXTENSIN-LIKE PROTEIN 7 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01919 Cma-Chr11:12664848 Cma14g01740 Cma-Chr14:12740774 2.72E-122 dispersed
Cma11g01919 Cma-Chr11:12664848 Cma09g00199 Cma-Chr9:826607 7.88E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01919 - - cmos:111437069 707.212