Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01919 ATGAGTGGCATAAGCCTGAGTGCCAAACATGGTAGCGTAGTCACTCATAATGACCATCACCACCACCACCCCCGTGCTCGATCACCGAGCACGAACCCGAGACTCCACCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAGGTCATTTACTCTGACCCAAAAAACCATACCACCAATTGGGTAGGGCCTTCAGTTTGCAGCTACTTTGGAGTATACTGTGCCCCATCTCTGGACGACTCAAATGTTCAGGTCGTCGCCGGAATCGACTTAAACCACGGGGACATTGCCGGATTCCTTCCTAATGAATTAGGCCTTTTAACAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGCGGCGTTTTGCCTCAATCTTTAGCCAATTTGTCTCTCCTCTTCGAATTAGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTCTTCTTCATCTTCCAAACTTGACATATCTTGACCTTCGATTCAACGAATTTGAAGGCCAAATTCCCCCTGAACTCTTCAACAAAAGCCTGGACGCCATTTTTATCAACAGCAATCGGTTCACCAACATAATCCCTCGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCCAACAACAATTTGAAGGGCTGTCTTCCACCGACGATTGCAAGTTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACGAGTTTATCAGGCTGTTTGCCGCAAGAAGTTGGGTTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAATAAATTAGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAATTGAATTTGGCCCACAATTTGTTTACTGGGAATTTGTTTGAAGGGCTTTGTAACCTTCCGAATTTGGAGAATGTGAGGGTTTCTTATAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATTTGACGGCGGAAGGGGTTGCTTTTGATGATCGTCGGAATTGTGTGCCGGAGAAGCCGCTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGATTGTTTTGAGCATCCGTGTGGCGGTGGTTATGGTTCAAGTATTGCGGCGGTTCCGGCTTCGGCGCCTATTTCTTCAACTTCTTCCGTTGTTGCCCCTGCCCACTTGTGA 1173 46.12 MSGISLSAKHGSVVTHNDHHHHHPRARSPSTNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCSYFGVYCAPSLDDSNVQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGVLPQSLANLSLLFELDLSNNRFVGPFPSVLLHLPNLTYLDLRFNEFEGQIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEVGFLYKLKVLDVSFNKLVGPLPYSLAGLAQLEQLNLAHNLFTGNLFEGLCNLPNLENVRVSYNYFCEEEGICRNLTAEGVAFDDRRNCVPEKPLQRSKKECSAVVERPVDCFEHPCGGGYGSSIAAVPASAPISSTSSVVAPAHL 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12664848 12668330 + CmaCh11G019190.1 Cma11g01919 304428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01919 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 7 385 - -
Cma11g01919 390 SUPERFAMILY L domain-like 38 312 - -
Cma11g01919 390 Gene3D Ribonuclease Inhibitor 39 203 IPR032675 -
Cma11g01919 390 Gene3D Ribonuclease Inhibitor 204 325 IPR032675 -
Cma11g01919 390 MobiDBLite consensus disorder prediction 15 29 - -
Cma11g01919 390 Pfam Leucine rich repeat 109 166 IPR001611 GO:0005515
Cma11g01919 390 SMART LRR_typ_2 154 178 IPR003591 -
Cma11g01919 390 SMART LRR_typ_2 273 293 IPR003591 -
Cma11g01919 390 SMART LRR_typ_2 249 272 IPR003591 -
Cma11g01919 390 SMART LRR_typ_2 106 129 IPR003591 -
Cma11g01919 390 MobiDBLite consensus disorder prediction 1 32 - -
Cma11g01919 390 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Cma11g01919 390 PANTHER EXTENSIN-LIKE PROTEIN 7 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01919 - - - cmos:111437069 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01919 Cma-Chr11:12664848 Cma14g01740 Cma-Chr14:12740774 2.72E-122 dispersed
Cma11g01919 Cma-Chr11:12664848 Cma09g00199 Cma-Chr9:826607 7.88E-125 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma09g00199 . 38 391 Leucine-rich Repeat extension Gene Families AT1G62440 59.3 1.8e-51 201.8
Cma14g01740 CST 43 370 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 9.8e-50 196.1
Cma01g01874 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 54.9 7.0e-48 189.9
Cma05g01334 CCT 174 343 Leucine-rich Repeat extension Gene Families AT1G62440 71.8 6.1e-44 176.8
Cma08g00898 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 58.0 3.1e-43 174.5
Cma08g00896 . 35 259 Leucine-rich Repeat extension Gene Families AT1G62440 56.6 5.8e-42 170.2
Cma17g00446 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.6 3.0e-38 157.9
Cma05g01334 CCT 117 520 Leucine-rich Repeat extension Gene Families AT4G13340 72.6 3.2e-66 250.8
Cma14g01740 CST 43 368 Leucine-rich Repeat extension Gene Families AT4G13340 70.6 1.7e-54 211.8
Cma09g00199 . 16 261 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-53 209.1
Cma08g00898 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.4 3.6e-49 194.1
Cma08g00896 . 21 259 Leucine-rich Repeat extension Gene Families AT4G13340 61.5 5.2e-48 190.3
Cma01g01874 . 17 221 Leucine-rich Repeat extension Gene Families AT4G13340 62.0 1.3e-43 175.6
Cma17g00446 . 30 225 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 4.9e-38 157.1
Cma06g01378 CST 37 370 Leucine-rich Repeat extension Gene Families AT4G13340 62.4 4.1e-37 154.1
Cma05g01334 CCT 149 520 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 7.0e-70 262.3
Cma09g00199 . 16 399 Leucine-rich Repeat extension Gene Families AT3G24480 62.2 2.3e-57 220.7
Cma14g01740 CST 43 368 Leucine-rich Repeat extension Gene Families AT3G24480 67.3 2.4e-54 210.7
Cma08g00898 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 58.6 9.5e-51 198.7
Cma08g00896 . 21 259 Leucine-rich Repeat extension Gene Families AT3G24480 59.0 8.0e-50 195.7
Cma01g01874 . 25 221 Leucine-rich Repeat extension Gene Families AT3G24480 66.2 1.7e-47 188.0
Cma17g00446 . 30 405 Leucine-rich Repeat extension Gene Families AT3G24480 58.9 1.5e-43 174.9
Cma06g01378 CST 37 370 Leucine-rich Repeat extension Gene Families AT3G24480 59.1 1.0e-36 152.1
Cma14g01740 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 69.9 7.9e-71 265.4
Cma06g01378 CST 39 369 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 3.2e-48 190.3
Cma09g00199 . 62 391 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 1.3e-44 178.3
Cma11g01919 . 29 361 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 2.8e-44 177.2
Cma08g00898 . 62 261 Leucine-rich Repeat extension Gene Families AT3G22800 68.3 2.2e-36 151.0
Cma05g01334 CCT 160 510 Leucine-rich Repeat extension Gene Families AT5G25550 63.1 2.5e-39 160.6
Cma01g01874 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 53.3 1.2e-38 158.3
Cma06g01378 CST 37 369 Leucine-rich Repeat extension Gene Families AT5G25550 66.4 3.6e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g01919 Cma_Chr11 FPKM 5.242819 4.724681 1.835516 1.069142 7.3012 6.551317 8.046942 5.217399 5.968742 5.254548