Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01924 ATGAAAACCAGTGCCGCCGCCGAGATTGTTCCGGTCCAAGGTGGCCATATCATCCGCTCCACCGCCCGGAAAGACCGCCATAGCAAGGTCTTCACCGCCAAAGGCCCTCGCGACCGCCGGGTGAGATTGTCGGCTCACACCGCCATCCGATTCTACGACGTGCAAGACCAGTTGGGTTATGATCGGCCCAGTAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTTGCCATTGACAAGCTTCGAGAGCTTCCTCCTTATTCCCCTATAGCCCATGGCTTCGCTGACCCAAATCGGAAAACAGGGGAAAGGGAAACAGAGTCCACTGAGTTACAATCCGCCGTCGGACACTTTGCTCCGTCGCTTGAACCATTCTTTCCGACGACCTCTGCCACCACTTCCATCAATTTCCAGGGCTATCCGGTGGATTTGATTCTGACACCCACTGACCCACCTCGAGATCTCGCCCTATCTCTCCATAATTTTCACGATTCACGCTTAATTCCGTCGGAGCAAAATGCAAACTCTTCGCCGGGAAATTACCAACGGCTCATCGGTGATTCGATTCCGGCAGGGTACGAAGGAGGCGACGCCGGGCTGTGGCTGCAGCAACCATTGATGGAGCAAAATTCGACGGCGGCGTTTTCCCAGGTTCCGATGCATGGTTGGAGCAATCAGATTCGTCAGTCGGCGGGGCACGGCGGCCGATTCGAGGGCCCGTCGGAGTTCTGTACGCCGTCACGGATTCGAGGTGAAGGTGTGGAAGACGGCGTCGTTTCGGGGAGTCATTCGTCGTCTCCGAATTATCACCGGTAG 816 55.76 MKTSAAAEIVPVQGGHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGYDRPSKAVDWLIKKAKFAIDKLRELPPYSPIAHGFADPNRKTGERETESTELQSAVGHFAPSLEPFFPTTSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDSIPAGYEGGDAGLWLQQPLMEQNSTAAFSQVPMHGWSNQIRQSAGHGGRFEGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12693821 12694636 + CmaCh11G019240.1 Cma11g01924 304433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01924 271 PANTHER TRANSCRIPTION FACTOR TCP4 121 233 - -
Cma11g01924 271 PANTHER TRANSCRIPTION FACTOR TCP4 4 110 - -
Cma11g01924 271 Pfam TCP family transcription factor 22 103 IPR017887 -
Cma11g01924 271 MobiDBLite consensus disorder prediction 229 271 - -
Cma11g01924 271 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Cma11g01924 271 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 110 IPR005333 GO:0003700
Cma11g01924 271 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 121 233 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01924 Cma-Chr11:12693821 Cma16g00416 Cma-Chr16:2078869 9.14E-45 dispersed
Cma11g01924 Cma-Chr11:12693821 Cma02g00071 Cma-Chr2:342641 5.35E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35938 PF03634 TCP 1.60E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01924 - - cmax:111486387 521.931