Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01936 ATGACACTCGATCACCACTCCCAACACTTCGACCAAACACGCAGTTCCGCCGAAGCCGATGATGATTCCGACCATCTCCACCCTACTCGTTCCACGACGTCTGTCGTCAATGGAGCCGACTGCGAGAATGCCGGCGATGGCCTTTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTTCCAACTTCTACTTCTTGCAGACCTTAGGCCTTCGTTCCATTATATGTCTTTGTCCTGAGTCATATCCTGAGGCGAGCATGGATTTTCTCAAGTCGAGTGGAATTCGATTGTTTCAACTTGGGATTGAAGGCACTAAGGAGCCTTTTGTGAACATTCCAGACAACACAATTCGTGAAGCACTTAAAACTATTCTCGATGTGAGGAATCGCCCAGTTCTAATCCATTGCAAACGAGGGAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCCTCAGTCTTTTATGAGTATCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGATGTTTCTGGCTTGAAGTATCTGCCATCTTCATTTTCTTGTTCCAAAAGATAA 636 47.8 MTLDHHSQHFDQTRSSAEADDDSDHLHPTRSTTSVVNGADCENAGDGLFVPPLNFAVVDNGIFRSGFPDSSNFYFLQTLGLRSIICLCPESYPEASMDFLKSSGIRLFQLGIEGTKEPFVNIPDNTIREALKTILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFYEYQRFAAAKARVSDQRFIELFDVSGLKYLPSSFSCSKR 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12737190 12740374 - CmaCh11G019360.1 Cma11g01936 304445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01936 211 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 208 IPR020422 GO:0006470|GO:0008138
Cma11g01936 211 ProSitePatterns Tyrosine specific protein phosphatases active site. 144 154 IPR016130 GO:0016311|GO:0016791
Cma11g01936 211 Gene3D Protein tyrosine phosphatase superfamily 48 198 IPR029021 -
Cma11g01936 211 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 195 IPR029021 -
Cma11g01936 211 Pfam Tyrosine phosphatase family 50 197 IPR004861 -
Cma11g01936 211 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Cma11g01936 211 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Cma11g01936 211 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Cma11g01936 211 PRINTS Plant and fungal dual specificity phosphatase signature 122 136 IPR020428 GO:0016791
Cma11g01936 211 MobiDBLite consensus disorder prediction 1 37 - -
Cma11g01936 211 PANTHER TYROSINE-PROTEIN PHOSPHATASE 18 210 - -
Cma11g01936 211 CDD PFA-DSP_Siw14 48 195 - -
Cma11g01936 211 MobiDBLite consensus disorder prediction 1 28 - -
Cma11g01936 211 PANTHER - 18 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01936 Cma-Chr11:12737190 Cma19g01048 Cma-Chr19:8861806 4.27E-104 wgd
Cma11g01936 Cma-Chr11:12737190 Cma02g00065 Cma-Chr2:304907 5.73E-103 wgd
Cma11g01936 Cma-Chr11:12737190 Cma20g00235 Cma-Chr20:1119634 2.08E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01936 K18045 - csv:101209768 348.591