Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01941 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGAGTTTGTGGCCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATATGTGGTCATCGTGTACCCGCTACATCGGAGAAAACTTCCTTGCAAGTTAGTGCGTTTCCTTCAGAGATCTTGCCGGAGTTTCTCTATTTGGGAAGTTATGACAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGATGCTGTTGAATTTCTAGATCAATGTGAACGAGACAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTCTCCAGCTATTGTGATTGCGTTCCTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTTGACTTAACTGAGCCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAGCAGAAAACGCCCTCCCAACCTTACCAATCTTCCCTCCTGTTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCAAAGACCTGCGACCCAGTTCCCACAACTCCATTCAACACCATTGGTGCGACATCTATCTTCTCCGCCCCCAACATAGACTTACCTTCCCATGAGTTCACGTTCGGCGCTGGCCAGACTCAAACCAGTTTCTCCGCAAGCCCCTTCGGCGCAAATCCAAGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 819 47.5 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLDQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPIYQQLQEYEQKVFGSAENALPTLPIFPPVGLPSFSFGFPKTCDPVPTTPFNTIGATSIFSAPNIDLPSHEFTFGAGQTQTSFSASPFGANPRNSTSSNIQMDSA 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12763870 12766378 - CmaCh11G019410.1 Cma11g01941 304450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01941 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Cma11g01941 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 - -
Cma11g01941 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Cma11g01941 272 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0008138|GO:0016311
Cma11g01941 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Cma11g01941 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311|GO:0016791
Cma11g01941 272 CDD DSP_plant_IBR5-like 47 176 - -
Cma11g01941 272 Gene3D Protein tyrosine phosphatase superfamily 40 187 IPR029021 -
Cma11g01941 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
Cma11g01941 272 MobiDBLite consensus disorder prediction 250 272 - -
Cma11g01941 272 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01941 Cma-Chr11:12763870 Cma04g00232 Cma-Chr4:1128648 5.19E-12 dispersed
Cma11g01941 Cma-Chr11:12763870 Cma19g01054 Cma-Chr19:8886613 3.76E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01941 K04459 - csv:101211000 523.857