Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g01941 | ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGAGTTTGTGGCCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATATGTGGTCATCGTGTACCCGCTACATCGGAGAAAACTTCCTTGCAAGTTAGTGCGTTTCCTTCAGAGATCTTGCCGGAGTTTCTCTATTTGGGAAGTTATGACAACGCTTCACGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATACGACAAGACGTTACCATTTGATGATGCTGTTGAATTTCTAGATCAATGTGAACGAGACAAGGCTCGTGTTTTGGTGCACTGCATGTCGGGAAAAAACAGGTCTCCAGCTATTGTGATTGCGTTCCTGATGAAATGCAAAGGATGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTTGACTTAACTGAGCCTATCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCAGCAGAAAACGCCCTCCCAACCTTACCAATCTTCCCTCCTGTTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCAAAGACCTGCGACCCAGTTCCCACAACTCCATTCAACACCATTGGTGCGACATCTATCTTCTCCGCCCCCAACATAGACTTACCTTCCCATGAGTTCACGTTCGGCGCTGGCCAGACTCAAACCAGTTTCTCCGCAAGCCCCTTCGGCGCAAATCCAAGAAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA | 819 | 47.5 | MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLDQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPIYQQLQEYEQKVFGSAENALPTLPIFPPVGLPSFSFGFPKTCDPVPTTPFNTIGATSIFSAPNIDLPSHEFTFGAGQTQTSFSASPFGANPRNSTSSNIQMDSA | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12763870 | 12766378 | - | CmaCh11G019410.1 | Cma11g01941 | 304450 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g01941 | 272 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE IBR5 | 1 | 271 | IPR044212 | GO:0009734|GO:0009738|GO:0033549|GO:0043407 | |
Cma11g01941 | 272 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE IBR5 | 1 | 271 | - | - | |
Cma11g01941 | 272 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 124 | 134 | IPR016130 | GO:0016311|GO:0016791 | |
Cma11g01941 | 272 | Pfam | Dual specificity phosphatase, catalytic domain | 55 | 179 | IPR000340 | GO:0008138|GO:0016311 | |
Cma11g01941 | 272 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 47 | 181 | IPR029021 | - | |
Cma11g01941 | 272 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 103 | 171 | IPR000387 | GO:0016311|GO:0016791 | |
Cma11g01941 | 272 | CDD | DSP_plant_IBR5-like | 47 | 176 | - | - | |
Cma11g01941 | 272 | Gene3D | Protein tyrosine phosphatase superfamily | 40 | 187 | IPR029021 | - | |
Cma11g01941 | 272 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 46 | 182 | IPR020422 | GO:0006470|GO:0008138 | |
Cma11g01941 | 272 | MobiDBLite | consensus disorder prediction | 250 | 272 | - | - | |
Cma11g01941 | 272 | SMART | dsp_5 | 46 | 179 | IPR020422 | GO:0006470|GO:0008138 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01941 | Cma-Chr11:12763870 | Cma04g00232 | Cma-Chr4:1128648 | 5.19E-12 | dispersed | |
Cma11g01941 | Cma-Chr11:12763870 | Cma19g01054 | Cma-Chr19:8886613 | 3.76E-171 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g01941 | K04459 | - | csv:101211000 | 523.857 |