Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g01948 ATGCTATCCACTCTGCAGCCTCCTCGCTATTCCCTTTCTCGCTTCCCTCTCCATCTTCCTTCTAAACCCTTCTTCTTTCACTCCAAACAAACCCCGCTCTCATCTCCATATCCCATCGCCAATGCCACTCTCACCGACCAAATTGCAACTTCCGCTTCTTCCCCATCTCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTTCTTTCCCGCCAATTCACTGCCACCCAACTTGCCGAGTCCTATCTCAATCGCCTTCGAGCATTGGAGCCTCACCTTAAGTCATTTCTCCACGTCTCTGATAGCGTTCTCTCCGATGGCCGCGAGATCGATGACAAAATTCTGAGAAATGAGGAATTGGGTCCTTTGGCTGGGGTCCTTGTCGGCGTTAAGGACAACATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTAGGATTCTTGATGGGTATCGACCGCCATTTGATGCTACTGCTGTGAGGAGAATCAAGGAGTTGGGCGGGATTGTGGTTGGGAAGACTAATTTGGATGAGTTTGGAATGGGTAGTACTACTGAAGCCTCCGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAAAAGGGTCCCGGGAGGATCATCAGGAGGCTCCGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCTTTAGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCGTCTTTTTGCGGTGTTGTTGGGTTGAAACCAACGTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGGTGCTTGGGGACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATTTCTGGTCATGATACACTTGACGCCACTAGCAGTAAACGAGAAGTTCATGATTTCACGTCGCAATTTACTGCTGTTGATTCATTGGAAAGTAAACCCTTGAAGGGATTGAGGATTGGCCTAATTCGTGAAACTCTTGATAATGGTGTTGATGGTAAAGTAAGTTCTGCAATACGTGCTGCTGCTTCACATCTTGAAGAACTGGGATGCTCCATCAATGAGGTATCACTGCCATCATTCTCTCTTGGGCTGCCTGCCTATTACATTCTTGCATCATCTGAATCATCTTCAAACTTAGCACGATATGATGGTGTCAGATATGGAAATCAAGCTATTGCTGATGAGCTAACTGGCCTATATCAAAATTCCAGAGCAACAGGATTTGGTTCAGAGGTGAAAATGAGAATTTTGATGGGAACATACGCTCTCTCTGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAAGGCAGCATTAGATGAATATGATATCTTAATATCACCAGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGAACGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCATTGGTGTTACCTTGTGGATTTGTTAGAGATGGGTCCTCCGACCTCCCTGTTGGCCTTCAAATGATTGGCGCAGCGTTTGACGAGGGAAAGCTTGTTAAGGTGGGACACATCTTTGAGCAAACTCTTCCAGACTGCAGATTTGTTCCACCTCTACTAGCCGATCACATTGTGGATCGCTGTCCCGTCGGAATCTCGGTCGATCCATTGTTCCGATCTATTCCATCTGTTCGGCGCCGAATCTCCGCTGCTTACGTACTCCTCCGACACCAGATATTGAAAAAGATGTCGGGCCAGACCCAACGTTTGAATGTGGTTCCGACGGTTACAATGCTTGGAGCGATGAAAGCCCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAGAAGAAGAGTGATGCTTTGACTGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCTCAGCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAACATCAAGCATATTGTTCTTGAGAATGTCCAAAGTGCCGCTATTAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAACTCCCAAAATTTGAACATTATTCTGATGGTGAGACCAAGAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGAGGCGCCTATGTGAAGGCAATTGAGGTTCTTGTAGAGCTTGCTTCACTTCAGACGTCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTTAATGCTCTGGAGAATGTTGTGAAGCCAAGGATTGAGAATACTATAAGTTACATTAAGGGAGAATTGGATGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATACAGGGTTATAAGAGAAGGGAAATTGAGAGGCAACGTATCAATGCCAAGCTATATGCTGAGGAACAACTTGCTGAAAAGATATCCTTGCAGAAGGGCGTTTCCATGACTTCAGCTCACAACTTATTGTCTGCAGCTGCTGAGAAGGACGAGGATATTATTTTTTGA 2556 45.93 MLSTLQPPRYSLSRFPLHLPSKPFFFHSKQTPLSSPYPIANATLTDQIATSASSPSLHSQILSIRHSLLSRQFTATQLAESYLNRLRALEPHLKSFLHVSDSVLSDGREIDDKILRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVRRIKELGGIVVGKTNLDEFGMGSTTEASAFQVTANPWDLKRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLGTTVADAGILLHAISGHDTLDATSSKREVHDFTSQFTAVDSLESKPLKGLRIGLIRETLDNGVDGKVSSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAIADELTGLYQNSRATGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFKAALDEYDILISPAAPSAAYKIGEKVNDPLAMYAGDIMTVNVNLAGLPALVLPCGFVRDGSSDLPVGLQMIGAAFDEGKLVKVGHIFEQTLPDCRFVPPLLADHIVDRCPVGISVDPLFRSIPSVRRRISAAYVLLRHQILKKMSGQTQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSAKESMGEVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIERQRINAKLYAEEQLAEKISLQKGVSMTSAHNLLSAAAEKDEDIIF 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12799292 12805630 + CmaCh11G019480.1 Cma11g01948 304457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g01948 851 ProSitePatterns Amidases signature. 204 235 IPR020556 -
Cma11g01948 851 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 64 539 IPR004412 GO:0006412|GO:0030956|GO:0050567
Cma11g01948 851 TIGRFAM gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 66 537 IPR004412 GO:0006412|GO:0030956|GO:0050567
Cma11g01948 851 SUPERFAMILY Amidase signature (AS) enzymes 60 546 IPR036928 -
Cma11g01948 851 Gene3D Amidase signature (AS) domain 56 542 IPR036928 -
Cma11g01948 851 Pfam ATP synthase subunit D 607 798 IPR002699 GO:0046961
Cma11g01948 851 Gene3D - 590 788 - -
Cma11g01948 851 Pfam Amidase 78 527 IPR023631 -
Cma11g01948 851 PANTHER GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, MITOCHONDRIAL 59 535 - -
Cma11g01948 851 PANTHER TRANSAMIDASE 59 535 IPR000120 GO:0003824
Cma11g01948 851 TIGRFAM V_ATPase_subD: V-type ATPase, D subunit 599 801 IPR002699 GO:0046961
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00580 Cma-Chr2:3356767 Cma11g01948 Cma-Chr11:12799292 2.45E-178 dispersed
Cma11g01948 Cma-Chr11:12799292 Cma11g01390 Cma-Chr11:9161690 4.90E-33 dispersed
Cma11g01948 Cma-Chr11:12799292 Cma19g01060 Cma-Chr19:8921352 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g01948 K02433 - csv:101212627 982.245